View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_high_46 (Length: 325)
Name: NF20539_high_46
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_46 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 6489519 - 6489222
Alignment:
| Q |
10 |
catcatcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
109 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6489519 |
catcaccacaatcggttatgctctccctaacaaaactcacaa---gtacgatgtcttctttcactcagacatcattcacacaatgatcacaaatagacct |
6489423 |
T |
|
| Q |
110 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcagca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6489422 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcatcg |
6489323 |
T |
|
| Q |
210 |
gtgtgtcc-ccccagctgctgtccgttcaactctacataggcggagaatgccttgttttccaaatcctacacgcctcgttcgtcctgaaatcacttgttg |
308 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
6489322 |
gtgtgtcccccccagctgatgtccgttcaactctacatagccgaagaatgccttgttttccaaatcctacatgcctcgttcgtcccgaaatcgcttgttg |
6489223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 6480033 - 6480265
Alignment:
| Q |
10 |
catcatcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
109 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6480033 |
catcaccacaatcgattacgctctccctaacaaaaaccacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
6480132 |
T |
|
| Q |
110 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcagca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6480133 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcagtg |
6480232 |
T |
|
| Q |
210 |
gtgtgtccccc-cagctgctgtccgttcaactc |
241 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |
|
|
| T |
6480233 |
gtgtgtcccccgcagttgctgtccgttcaactc |
6480265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 51946769 - 51947068
Alignment:
| Q |
10 |
catcatcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
109 |
Q |
| |
|
||||| |||||||||||| | | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51946769 |
catcaccacaatcgattacgctgtccctaataaaactcacaacaagcacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacct |
51946868 |
T |
|
| Q |
110 |
ttcatggtggacaaatggctctcaagcatcaaaccctacgaaaacaacaatagattccttgtcggcttggatgttgagtgtctcttcatcaaccgcagca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
51946869 |
ttcatggtggacaaatggctctcaagcatcaaaccatacgaaaacaacaatagcttccttgtcggcttagatgttgagtgtctcttcatcaaccactctg |
51946968 |
T |
|
| Q |
210 |
gtgtgtc-cccccagctgctgtccgttcaactctacataggcggagaatgccttgttttccaaatcctacacgcctcgttcgtcctgaaatcacttgttg |
308 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
51946969 |
gtgtgtctcccccagctgctgtcc-ttcaactatacataggcggagaatgccttgttttccaaatcctacacgcctcgttcgtcccgaaatcgcttgttg |
51947067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University