View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_high_47 (Length: 302)

Name: NF20539_high_47
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_high_47
NF20539_high_47
[»] chr2 (1 HSPs)
chr2 (2-290)||(17491847-17492135)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 290
Target Start/End: Complemental strand, 17492135 - 17491847
Alignment:
Q  2 tttttggtgttgaagtttctgattctcttttgttgaaacttgttctcaaaatcatagcaccatctttggaaccaaaactatagtggaattgaagaccaaa 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17492135 tttttgttgttgaagtttctgattctcttttgttgaaacttgttctcaaaatcatagcaccatctttggaaccaaaactatagtggaattgaagaccaaa 17492036  T
Q  102 gagtgaatgcctaacaatttcttcccaagctgatgatagtaaagaaagtgataatcccatagagatgtagattcacaccaatttcaatttgtttgatgaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17492035 gagtgaatgcctaacaatttcttcccaagctgatgatagtaaagaaagtgataatcccatagagatgtagattcacaccaatttcaatttgtttgatgaa 17491936  T
Q  202 aattcaatactatactttcttgaatcctgttgaaattacatataaatcatcattaatcaaaccatacataagtcgaattttctgagtat 290  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  17491935 aattcaatactatactttcttgaatcctgttcaaattacatataaaccatcattaatcaaaccatacataagtcgaattttttgagtat 17491847  T

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