View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_51 (Length: 287)
Name: NF20539_high_51
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 38826446 - 38826184
Alignment:
| Q |
13 |
aaaattgatttagaaaaggagagaccaatttcgtaaataagagactgaatttaccta--atatatatggtcattggtagatgttttatattat---aatt |
107 |
Q |
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| T |
38826446 |
aaaattgatttagaaaaggagagaccaatttcgtaaataagagactgaatttacctataatatatatggtcattggaagatgttttatattattataatt |
38826347 |
T |
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| Q |
108 |
aacannnnnnnngtaagcaacagatatttgcaatgccagtgtttgacatgattgaaaccctcttggttaagcaaatggaatttgcacctacatttgcact |
207 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38826346 |
aacattttttt-gtaagcaacagatatttgcaatgccagtgtttgacatgattgaaaccctcttggttaagcaaatggaatttgcacctacatttgcact |
38826248 |
T |
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| Q |
208 |
tcgattatcagttcgcacactatatgttggtatgtctacttgttgcactagatcaatgaaagct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38826247 |
ccgattatcagttcgcacactatatgttggtatgtctacttgttgcactagatcaatgaaagct |
38826184 |
T |
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