View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_56 (Length: 271)
Name: NF20539_high_56
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 1350739 - 1350488
Alignment:
| Q |
1 |
acatataacaacatcaacaactatgcaacgatatcctggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgc |
100 |
Q |
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| T |
1350739 |
acatataacaacatcaacaactatgcaacgatatcccggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgc |
1350640 |
T |
|
| Q |
101 |
gcgcaaattcttccacttctctgtcggtcatcgggtcctgatcaatctcatcatcaaactcaaccctaggatcatcttctttctccacttgcttgtcaat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350639 |
gcgcaaattcttccacttctctgtcggtcattgggtcctgatcaatctcatcatcaaactcaaccctaggatcatcttctttctccacttgcttgtcaat |
1350540 |
T |
|
| Q |
201 |
ttttgccgttaaggcctgatcaatcttatcatcaaactcaaccacatgatcc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350539 |
ttttgccgttaaggcctgatcaatcttatcatcaaactcaaccacatgatcc |
1350488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 1361275 - 1361149
Alignment:
| Q |
39 |
gtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcatcgggtcc |
138 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||| ||| |
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| T |
1361275 |
gtgattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcattaagtca |
1361176 |
T |
|
| Q |
139 |
tgatcaatctcatcatcaaactcaacc |
165 |
Q |
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| T |
1361175 |
tgatcaatctcatcatcaaactcaacc |
1361149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 1344159 - 1344085
Alignment:
| Q |
51 |
atctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc |
125 |
Q |
| |
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|||||||||| |||||||| ||||||||||| ||| |||||||||||||| ||||||||||| ||||| ||||| |
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| T |
1344159 |
atctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc |
1344085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 1355428 - 1355502
Alignment:
| Q |
51 |
atctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc |
125 |
Q |
| |
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| T |
1355428 |
atctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc |
1355502 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 1344072 - 1344031
Alignment:
| Q |
210 |
taaggcctgatcaatcttatcatcaaactcaaccacatgatc |
251 |
Q |
| |
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| T |
1344072 |
taaggcctgatcaatctcatcatcaaactcaaccacaagatc |
1344031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 1355515 - 1355556
Alignment:
| Q |
210 |
taaggcctgatcaatcttatcatcaaactcaaccacatgatc |
251 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
1355515 |
taaggcctgatcaatctcatcatcaaactcaaccacaagatc |
1355556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 1344067 - 1344023
Alignment:
| Q |
137 |
cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
1344067 |
cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt |
1344023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 1355520 - 1355564
Alignment:
| Q |
137 |
cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
1355520 |
cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt |
1355564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 1365119 - 1365043
Alignment:
| Q |
19 |
aactatgcaacgatatcctggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaa |
95 |
Q |
| |
|
||||||||||| || |||| ||||||| || || | ||| | |||||||||||||||||||||||| |||||||| |
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|
| T |
1365119 |
aactatgcaacaatttccttgtgattgccaacatatgtaataatttcttttattctctcttccaaagaacaatttaa |
1365043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 24618579 - 24618473
Alignment:
| Q |
19 |
aactatgcaacgatatcctggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccactt |
118 |
Q |
| |
|
|||||||||| || |||| ||||||| || | |||||||| ||||| || | ||||||||| ||| || ||||||||||| |||||||||||||||| |
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| T |
24618579 |
aactatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccactt |
24618480 |
T |
|
| Q |
119 |
ctctgtc |
125 |
Q |
| |
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| ||||| |
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| T |
24618479 |
ccctgtc |
24618473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 24618455 - 24618411
Alignment:
| Q |
137 |
cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt |
181 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
24618455 |
cctgatcaatctcatcattaaactcaaccacaggatcatcttctt |
24618411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 43364441 - 43364496
Alignment:
| Q |
64 |
tcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttc |
119 |
Q |
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|||| ||||||||||| ||| | |||||||||||||| ||||||||||||||||| |
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| T |
43364441 |
tcttgtattctctcttgcaaggaacaatttaatctgcgggcaaattcttccacttc |
43364496 |
T |
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