View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_high_59 (Length: 262)

Name: NF20539_high_59
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_high_59
NF20539_high_59
[»] chr4 (2 HSPs)
chr4 (1-253)||(6584798-6585050)
chr4 (1-65)||(27360346-27360410)
[»] chr6 (1 HSPs)
chr6 (153-243)||(17190629-17190719)
[»] chr7 (1 HSPs)
chr7 (137-253)||(20362640-20362756)
[»] chr2 (3 HSPs)
chr2 (182-253)||(26538863-26538934)
chr2 (175-248)||(13495035-13495111)
chr2 (203-248)||(19089457-19089502)
[»] chr3 (2 HSPs)
chr3 (153-244)||(7117221-7117312)
chr3 (27-74)||(13100853-13100900)
[»] scaffold0081 (1 HSPs)
scaffold0081 (175-237)||(7770-7832)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 6584798 - 6585050
Alignment:
Q  1 actggtataaaataatataaaagacaagatcaaagataaagaaggtgaaacctttgtatattattctcttcaaataaatctttacattgtaatataggtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6584798 actggtataaaataatataaaagacaagatcaaagataaagaaggtgaaacctttgtatattattctcttcaaataaatctttacattgtaatataggtc 6584897  T
Q  101 atatttataagttacaagtgcatggatggtcttagaactaaatgccaataccaatgaatagagtcatttagtagtaggagctaaggaatatataaaggct 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6584898 atatttataagttacaagtgcatggatggtcatagaactaaatgccaatacaaatgaatagagtcatttagtagtaggagctaaggaatttataaaggct 6584997  T
Q  201 agggaaaatggacatccatattataataatattattcataacactcccctttg 253  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  6584998 agggaaaatggacatccatattatagtaatattattcataacattcctctttg 6585050  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27360410 - 27360346
Alignment:
Q  1 actggtataaaataatataaaag-acaagatcaaagataaagaaggtgaaacctttgtatattatt 65  Q
    |||| |||||||||| ||||||| ||||||||||||||||| ||||||||| |||| | |||||||    
T  27360410 actgatataaaataaaataaaaggacaagatcaaagataaa-aaggtgaaaactttatgtattatt 27360346  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 17190719 - 17190629
Alignment:
Q  153 aatgaatagagtcatttagtagtaggagctaaggaatatataaaggctagggaaaatggacatccatattataataatattattcataaca 243  Q
    |||||||| |||||||||||  ||| || ||||| ||||| |||| |||||||||||||||||||| || ||| |||||||||||||||||    
T  17190719 aatgaataaagtcatttagtcatagtagttaagggatatagaaagtctagggaaaatggacatccacatcatattaatattattcataaca 17190629  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 20362756 - 20362640
Alignment:
Q  137 actaaatgccaataccaatgaatagagtcatttagtagtaggagctaaggaatatataaaggctagggaaaatggacatccatattataataatattatt 236  Q
    ||||| |||||||| ||| ||||| || |||||| ||||||||| ||||||| ||| |||| ||  || ||||||||||||| || ||| || ||| |||    
T  20362756 actaattgccaataacaacgaatataggcatttactagtaggagttaaggaacatagaaagccttagggaaatggacatccacatcatattattatcatt 20362657  T
Q  237 cataacactcccctttg 253  Q
    |||||||||||| ||||    
T  20362656 cataacactcccttttg 20362640  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 26538863 - 26538934
Alignment:
Q  182 taaggaatatataaaggctagggaaaatggacatccatattataataatattattcataacactcccctttg 253  Q
    ||||||||||| |||  ||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||    
T  26538863 taaggaatatagaaaacctaggtaatatggacattcatatcataataatattattcataacacttccctttg 26538934  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 13495111 - 13495035
Alignment:
Q  175 taggagctaaggaatatataaaggctagggaaaatggacatccatatta---taataatattattcataacactccc 248  Q
    |||||| ||||||||||| ||||  || ||| |||||||||||||||||   |||||||||||||||||| ||||||    
T  13495111 taggagttaaggaatatagaaagcttatggataatggacatccatattatattaataatattattcataatactccc 13495035  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 19089502 - 19089457
Alignment:
Q  203 ggaaaatggacatccatattataataatattattcataacactccc 248  Q
    |||| ||||||||||| || ||||||||||||||||||||||||||    
T  19089502 ggaatatggacatccacatcataataatattattcataacactccc 19089457  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 7117221 - 7117312
Alignment:
Q  153 aatgaatagagtcatttagtagtaggagctaaggaatatataaaggctagggaaaatggacatccatattataataatattattcataacac 244  Q
    |||||||| || ||||||||  ||| |  ||||| ||||| || | |||||||||||||||||||| || ||| ||||||||||||||||||    
T  7117221 aatgaataaagacatttagtcatagaaattaagggatataaaaggtctagggaaaatggacatccacatcatattaatattattcataacac 7117312  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 13100900 - 13100853
Alignment:
Q  27 agatcaaagataaagaaggtgaaacctttgtatattattctcttcaaa 74  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||    
T  13100900 agattaaagatgaagaaggtgaaatctttgtatattattctcttcaaa 13100853  T

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Target: scaffold0081 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 7832 - 7770
Alignment:
Q  175 taggagctaaggaatatataaaggctagggaaaatggacatccatattataataatattattc 237  Q
    |||||| ||||| ||||| |||| |||||||||||||||||| | || ||| |||||||||||    
T  7832 taggagttaagggatatagaaagtctagggaaaatggacatctacataatattaatattattc 7770  T

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