View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_61 (Length: 250)
Name: NF20539_high_61
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_61 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 39310052 - 39310296
Alignment:
| Q |
13 |
aatatcttccatagagtattgtcatcatatacaaagctcataaatcataagccaccaaagacaattgaagaagcaattttccagaagtagatagcaatca |
112 |
Q |
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| T |
39310052 |
aatatcttccatagagtattgtcatcatatacaaagctcataaatcataagccaccaaagacaattgaagaagcaattttccagaagtagatagcaatca |
39310151 |
T |
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| Q |
113 |
tcatctttacgattgatatgagttgaattttgagac-------atgtatatatgttttctagtgatacaaacaagatctattggtccacagctagtttgt |
205 |
Q |
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| T |
39310152 |
tcatctttacgattgatatgagttgaactttgagacatatgatatgtatatatattttctactgatacaaacaagacctattgccccacagctagtttgt |
39310251 |
T |
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| Q |
206 |
gtcgagttctactatgacgccttaggccggtacttgaaaattgtc |
250 |
Q |
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| T |
39310252 |
gtcgagttctattatgacgccctaggccggtacttgaaaattgtc |
39310296 |
T |
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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 38848444 - 38848540
Alignment:
| Q |
92 |
tccagaagtagatagcaatcatcat---ctttacgattgatatgagttgaattttgagacatgtatatatgttttctagtgatacaaacaagatctat |
186 |
Q |
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| T |
38848444 |
tccataagtagatcgcaatcatcatattctttacgattaatattagttgaa-tttgagtcatgtatataagttttcaactgatataaacaagacctat |
38848540 |
T |
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