View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_67 (Length: 248)
Name: NF20539_high_67
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_67 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 11295 - 11524
Alignment:
| Q |
20 |
gattctgcctcattatggcattgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatccttttatttcttacaagaatcata |
119 |
Q |
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| T |
11295 |
gattctgcctctttatggcattgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatccttttatttcttacaagaatcata |
11394 |
T |
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| Q |
120 |
ataaaaatactccttgtgatgtttgtcatttttccaaacaaagagttcttccttatcctaatagtgttactcattctaataacatttttgatttgttaca |
219 |
Q |
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| T |
11395 |
ataaaaatactccttgtgatgtttgtcatttttccaaacaaagagttcttccttatcctaatagtgttactcattctaataacatttttgatttgttaca |
11494 |
T |
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| Q |
220 |
tgctgatatatggggccc-tatgctactcc |
248 |
Q |
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| T |
11495 |
tgctgatatatggggcccttatgctactcc |
11524 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 22454768 - 22454726
Alignment:
| Q |
44 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
86 |
Q |
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| T |
22454768 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
22454726 |
T |
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