View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_77 (Length: 241)
Name: NF20539_high_77
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_77 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 21747 - 21969
Alignment:
| Q |
4 |
cttaggtcttggaacaatcagttggagaaaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatgga |
103 |
Q |
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| T |
21747 |
cttaggtcttggaacaatcagttggagaaaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatgga |
21846 |
T |
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| Q |
104 |
aatacctttatttggtacaacaaacaagcaatacgagttgttgccaaccttaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatga |
203 |
Q |
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| T |
21847 |
aatacctttatttggtacgacaaacaagcaatacgagtggttgccaagctcaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatga |
21946 |
T |
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| Q |
204 |
aacacaaaattagggaattttgt |
226 |
Q |
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||||||||||||||||| ||||| |
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| T |
21947 |
aacacaaaattagggaactttgt |
21969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 13715 - 13930
Alignment:
| Q |
10 |
tcttggaacaatcagttggagaaaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatggaaatacc |
109 |
Q |
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|||||||||||||| |||||| |||||||||| |||| |||| |||||| || | |||| ||||| || |||||| |||||||||||||||||| | | |
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| T |
13715 |
tcttggaacaatcacttggagcaaaggaaacttttttcccttcgagatcatattctactagaaaatcaacgtgtgctatatttccaaagatggaaagatc |
13814 |
T |
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| Q |
110 |
tttatttggtacaacaaacaagcaatacgagttgttgccaaccttaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatgaaacaca |
209 |
Q |
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| T |
13815 |
attggatggtatggccaacaagcaatacgagttgttgccaagaacaccaagtaatttctgaggtttaagggtaacatcggctcccgtgaaatgaaacacg |
13914 |
T |
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| Q |
210 |
aaattagggaattttg |
225 |
Q |
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| T |
13915 |
aaattagggaactttg |
13930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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