View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_83 (Length: 238)
Name: NF20539_high_83
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_83 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 37788727 - 37788939
Alignment:
| Q |
17 |
agcatgatgtgcgattaacataaaatgtgacatgtttagttaatgaattctaatctttaacaacatgatcggatggaccgctttgaataatgttcttaca |
116 |
Q |
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| T |
37788727 |
agcaagatgtgcgattaacataaaatgtgacatgtttagttaatgaattctaatctttaacaacatgatcagatggaccgctttgaataatg-------- |
37788818 |
T |
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| Q |
117 |
attcgggagatgtttttaccggttcttaaaaagaacatgagatcgtgcagtagattaactaggccaaatttgnnnnnnnnnctttctgttatgcaggaag |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
37788819 |
-ttcgggagatgtttttaccggttcttaaaaataacatgagatcgtgcagtagattaactaggccaaattcgtttttttttctttctgttatgcaggaag |
37788917 |
T |
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| Q |
217 |
gaaagaccaaagattactcgga |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
37788918 |
gaaagaccaaagattactcgga |
37788939 |
T |
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