View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_88 (Length: 232)
Name: NF20539_high_88
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_88 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 45273061 - 45272919
Alignment:
| Q |
1 |
ggtactagcctagatagaagtctctttaatgttatgtagcaactcttatcattatattatgttgttggttaagtttaatttggtttttaatttttccatt |
100 |
Q |
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| T |
45273061 |
ggtactagcctagatagaagtctctttaatgttatgtagcaactcttatcattatattatgttgtt---ttagtttaatttggtttttaatttttccatt |
45272965 |
T |
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| Q |
101 |
ccactagatttgtggtagattctcattagtattttgattctgttgg |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45272964 |
ccactagatttgtggtagattctcattagtattttgattctgttgg |
45272919 |
T |
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