View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_89 (Length: 230)
Name: NF20539_high_89
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_89 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 55933 - 55742
Alignment:
| Q |
17 |
cacagaggaaagcccgtggagattgtgtagtgttgcacaagttgaacaagcaaagatattactttcggttattccaatttttgcatgcactataattttc |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55933 |
cacaaaggaaagcccgtggagattgtgtagtgttgcacaagttgaacaagcaaagatattactttcggttattccaatttttgcatgcactataattttc |
55834 |
T |
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| Q |
117 |
aacactatcttagcacaacttcaaacattctcggtccagcaaggaagtgccatggacacacatgtcacaaaatcatttcatatccctccagc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55833 |
aacactatcttagcacaacttcaaacattctcggtccagcaaggaagtgccatggacacacatgtcacaaaatcatttcatatccctccagc |
55742 |
T |
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