View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_9 (Length: 619)
Name: NF20539_high_9
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 39627987 - 39627593
Alignment:
| Q |
11 |
taataatcaaaggcaaagctgaattacaaatggatgtttgatgatagaattggggactaggaagtaaccaacaacattgccatc---------------- |
94 |
Q |
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| T |
39627987 |
taataatcaaaggcaaagctgaattacaaatggatgtttgatgatagaattggggactaggaagtaaccaacaacattgtcatcttaactaataactagg |
39627888 |
T |
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| Q |
95 |
-agcttggttgatgagctaccggcaccaaaagagtcttaagttagaggccaaaagatagaatgttaggaacttacataaacactaacattggtctaacag |
193 |
Q |
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| T |
39627887 |
cagcttggttgatgagctaccggcaccaaaagagtcttaagttagaggccaaaagatagaatgttaggaacttacataaacactaacattggtctaacag |
39627788 |
T |
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| Q |
194 |
aagaaaaaacttctagctatatttccacactgttgttggttaaataaatcaatactgaatgaatctcctccatgagcagaacaaatactaacagacctaa |
293 |
Q |
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| T |
39627787 |
aagaaaaaacttctagctatatttccacactgttggtggttaaataaatcaatactgaatgaatctcctccatgagcagaacaaatactaacagacctaa |
39627688 |
T |
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| Q |
294 |
ctttaggataacatgaaaaacagaaattaaaggtgtgcatagcaaagaggcaaaattgtttctaatggcagtttagttcaatcatccaaaactac |
388 |
Q |
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| T |
39627687 |
ctttaggataacatgaaaaacagaaattaaaggtgtgcatagcaaagaggcaaaattgtttctaatggcagtttagttcaatcatccaaaactac |
39627593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 452 - 604
Target Start/End: Complemental strand, 39627529 - 39627377
Alignment:
| Q |
452 |
gcatgtcatttttcttatctattagtcacattgtaacagggctctcaagttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaa |
551 |
Q |
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| T |
39627529 |
gcatttcatttttcttatctattagtcacattgtaacagggctctcaagttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaa |
39627430 |
T |
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| Q |
552 |
aattgcagctgtttccttttctattgatcatcaagaacttgatttgtccttcc |
604 |
Q |
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| T |
39627429 |
aattgcagctgtttccttttctattgatcatcaagaacttgatttgtccttcc |
39627377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 37 - 388
Target Start/End: Complemental strand, 39617232 - 39616880
Alignment:
| Q |
37 |
caaatggatgtttgatgatagaattggggactaggaagtaaccaacaacattgccatc----------agcttggttgatgagctaccggcaccaaaaga |
126 |
Q |
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| T |
39617232 |
caaatggatgtttgatgatagaattggggactaggcagtaaccaacaatattgtcaccttaactaggcagcttggttgatgagctagtgacactgaaaga |
39617133 |
T |
|
| Q |
127 |
gtcttaagttagaggccaaaagatagaatgttaggaacttacataaacactaacattggtctaacagaagaaaaaacttctagctatatttccacactgt |
226 |
Q |
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| T |
39617132 |
gtcttaagttaga--------------acgttaggaacttacataaatactaacatcagtctaacagaagaaaaaacttctagttatatttccacactgt |
39617047 |
T |
|
| Q |
227 |
tgttggttaaataaatcaatactgaatgaatctcctccatgagcagaacaaatactaacagacctaactttaggataacatgaa---------aaacaga |
317 |
Q |
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| T |
39617046 |
tggtggttaaataaatcaatact----gaatctcctccatgagcagaacaaataccaacagacctgactttagggtaacatgaaaaacagaagaaacaga |
39616951 |
T |
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| Q |
318 |
aattaaaggtgtgcatagcaaagaggcaaaattgtttctaatggcagtttagttcaatcatccaaaactac |
388 |
Q |
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| T |
39616950 |
aatcaaagctgtgcatagcaaagaggaaaaattgtttcttatggcactttagttcaataatccaaaactac |
39616880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 452 - 604
Target Start/End: Complemental strand, 39616819 - 39616649
Alignment:
| Q |
452 |
gcatgtcatttttcttatctattagtcacattgtaacagggctctc------------------aagttatgagagcataaagctcaagtttccgaatca |
533 |
Q |
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| T |
39616819 |
gcatgtcatttttcttatctattagtcacattgtaacatggctctcaaaattcacaagcaatttaacttatgagagcataaagctcaagtttccgaatca |
39616720 |
T |
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| Q |
534 |
tcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaacttgatttgtccttcc |
604 |
Q |
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| T |
39616719 |
tcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaggaacttcatttgtccttcc |
39616649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 501 - 589
Target Start/End: Complemental strand, 24200402 - 24200314
Alignment:
| Q |
501 |
ttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaac |
589 |
Q |
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||||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||| |||||||||||||||||| |||| |
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| T |
24200402 |
ttatgagagcataaagctcaagtttccaaatcttcccttttctactaacaaagttgcagctgttttcttttctattgatcatcaggaac |
24200314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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