View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_high_91 (Length: 223)
Name: NF20539_high_91
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_high_91 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 40788481 - 40788386
Alignment:
| Q |
1 |
atcaatgtctaaggttcaataactcgttttcttatctacttctttcatttcacactcgcgcatatcaaatttcatccatgtcgcagaagaaaaaga |
96 |
Q |
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| T |
40788481 |
atcaatgtctaaggttcaataactcgttttcttatcttcttctttcatttcacactcgcgcatatcaaatttcatccatgtcgcagaagaaaaaga |
40788386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 40788320 - 40788282
Alignment:
| Q |
168 |
gagaataagaatgaaacgcagaagaagcagaacaacaac |
206 |
Q |
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| T |
40788320 |
gagaataagaatgaaacgcagaagaagcagaacaacaac |
40788282 |
T |
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