View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_12 (Length: 573)
Name: NF20539_low_12
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 5127119 - 5127331
Alignment:
| Q |
12 |
tcatcatttccatcttttttagttgagtctatgtcgcattccatcgccgttcaactcaacctcagaactataatttgtcaacaagctcacaccagtcnnn |
111 |
Q |
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| T |
5127119 |
tcatcatttccatcttttttagttgagtctatgtcgcattccatcgccgttcaactcaacctcagaactataatttgtcagcaagctcacaccagtcaaa |
5127218 |
T |
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| Q |
112 |
nnnncttcatgtcttattcatacaagtgtagaagaggaaattcatattatggcaggttttggaaatgttgatttcagcaactcgtctacatctacaagat |
211 |
Q |
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| T |
5127219 |
aaaacttcatatcttattcatacaagtgtagaagaggaaattcatattatggcaggttttggaaatgttgatttcagcaactcgtctacatctacaagat |
5127318 |
T |
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| Q |
212 |
atgtcaatatact |
224 |
Q |
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||||||||||||| |
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| T |
5127319 |
atgtcaatatact |
5127331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 356 - 532
Target Start/End: Original strand, 5128314 - 5128490
Alignment:
| Q |
356 |
tttcccgcacactataatcaaccactctaatttacgctacacacattattttactatactttgtccgactttaccacctaaccgaacttcaaattacccc |
455 |
Q |
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| T |
5128314 |
tttcccgcacactataatcaaccactctaatttacgctacacacattattttactatactttgtccgactttaccacctaaccgaacttcaaattacccc |
5128413 |
T |
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| Q |
456 |
gttggaaaccagaagtttaagacaaaaacaaaatttgaattccacaatctactttcaactactctaattaattgagt |
532 |
Q |
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| T |
5128414 |
gttggaaaccagaagtttaagacaaaaacaaaatttgaattccacaatctactttcaactactctaattaattgagt |
5128490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 210 - 351
Target Start/End: Original strand, 5127348 - 5127489
Alignment:
| Q |
210 |
atatgtcaatatactgcaatcttgttctccttaacttcaactttgttttcaagtgtcaatcacatcttcatcctctttccttttgttgagactcttgcgt |
309 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5127348 |
atatgtcaatatactgcaatcttattctccttaacttcaacattgttttcaagtgtcaatcacatcttcatcctctttccttttgttgagactcttgcgt |
5127447 |
T |
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| Q |
310 |
acaaatatcggattaaattgttgacatcaaccaacaagttat |
351 |
Q |
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| T |
5127448 |
acaaatatcggattaaattgttgacatcaaccaacaagttat |
5127489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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