View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_13 (Length: 563)
Name: NF20539_low_13
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Complemental strand, 7421548 - 7421048
Alignment:
| Q |
19 |
caacacagcataggaccaataaggtcgagtgaggtatttgggcgtgaggacagctagtttggtgaacgatgcttttggagacataaaactgtttaaggaa |
118 |
Q |
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| T |
7421548 |
caacacagcataggaccaataaggtcgagtgaggcatttgggcgtgaggacagctagtttggtgaacgatgcttttggagacataaaactgtttaaggaa |
7421449 |
T |
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| Q |
119 |
aacataaatgaatcaagtgtggtcatccaagatatatagtaaggaaacatttaaaacgatgaacagaggcagttgcataagaacccaaattatcaacata |
218 |
Q |
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| T |
7421448 |
aacataaatgaagcaagtgtggtcatccaagatatatagtaaggaaacatttaaaacgatgaacagaggcagttgcatgagaacccaacttatctacat- |
7421350 |
T |
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| Q |
219 |
tatgaaccaaatcaaacaatgctttccttaaaaataaaattatcaaaaatgctggtggttgaattctaattttcttcctaaatatcacatcatggtattt |
318 |
Q |
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| T |
7421349 |
---gaaccaaatcaaacaatgctttccttaaaaataaaattatcaaaaatgctggtggttgaattctaattttcttccaaaatatcacatcatggtattt |
7421253 |
T |
|
| Q |
319 |
gggtggttactaaaataattttaggcttatctgtttcctcatcttttaaataattatttcgttgcgatcgggaaatcgtattgtaagatagtttaggttt |
418 |
Q |
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| T |
7421252 |
gggtggttactaacataattttaggcttatccgtttcctcatcttttaaataattattttgttgcgatcgggaaatcgtattgtaagatagtttaggttt |
7421153 |
T |
|
| Q |
419 |
ggatcatattgggcctaagtcaaatatttttagatgtacatgcgaaagtcactttgatgttaaaatcaggtaccttttccgtcccaaaataaatgtgtca |
518 |
Q |
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| T |
7421152 |
ggattatattgggcctaagtcaaatatttttagatgtacatgtgaaagtcactttgatgttaaaatcaggtactttttccgtcccaaaataaatgtgtta |
7421053 |
T |
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| Q |
519 |
tttgt |
523 |
Q |
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||||| |
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| T |
7421052 |
tttgt |
7421048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 258 - 491
Target Start/End: Complemental strand, 13574023 - 13573791
Alignment:
| Q |
258 |
ttatcaaaaatgctggtggttgaattctaattttcttcctaaatatcacatcatggtatttgggtggttactaaaataattttaggcttatctgtttcct |
357 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||| |||||| ||| | |||||||||||| ||||| |
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| T |
13574023 |
ttatcaaagatgctggtggttgaattctaattttcttccttaatataatatcatgctatttgggtgattactagcgtaa-tataggcttatctggttcct |
13573925 |
T |
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| Q |
358 |
catcttttaaataattatttcgttgcgatc-gggaaatcgtattgtaagatagtttaggttt-ggatcatattgggcctaagtcaaatatttttagatgt |
455 |
Q |
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| T |
13573924 |
catctttgaaataatgattttgttgcaaacagggaaatcgtattgtatgagagtttaagtttgggctcatattgagcttaagttaa--attttgatatgg |
13573827 |
T |
|
| Q |
456 |
acatgcgaaagtcactttgatgttaaaatcaggtac |
491 |
Q |
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| T |
13573826 |
acatgtaaaggttactttgatgttaaaatcaggtac |
13573791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 14202129 - 14202065
Alignment:
| Q |
254 |
aaaattatcaaaaatgctggtggttgaattctaattttcttcctaaatatcacatcatggtattt |
318 |
Q |
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| T |
14202129 |
aaaaatatcaaagatgctagtggttgaattctaaatttcttcctaaatatgacatcatggtattt |
14202065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 13567957 - 13567904
Alignment:
| Q |
259 |
tatcaaaaatgctggtggttgaattctaattttcttcctaaatatcacatcatg |
312 |
Q |
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| T |
13567957 |
tatcaaagatgctagtggttgaattttaattttcttcataaatatgacatcatg |
13567904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 3923733 - 3923792
Alignment:
| Q |
267 |
atgctggtggttgaattctaattttcttcctaaatatcacatcatggtatttgggtggtt |
326 |
Q |
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| T |
3923733 |
atgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggtt |
3923792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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