View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_low_16 (Length: 550)

Name: NF20539_low_16
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_low_16
NF20539_low_16
[»] chr8 (11 HSPs)
chr8 (1-544)||(1965298-1965841)
chr8 (3-544)||(2010855-2011396)
chr8 (290-550)||(1969234-1969494)
chr8 (290-550)||(2007527-2007787)
chr8 (291-550)||(2004148-2004407)
chr8 (270-550)||(2437034-2437308)
chr8 (310-518)||(1963654-1963862)
chr8 (301-446)||(2017941-2018086)
chr8 (135-170)||(1945385-1945420)
chr8 (3-49)||(1945435-1945482)
chr8 (340-377)||(23269096-23269133)
[»] chr1 (3 HSPs)
chr1 (270-550)||(5902798-5903078)
chr1 (270-550)||(5906282-5906562)
chr1 (8-158)||(35828081-35828220)
[»] chr4 (1 HSPs)
chr4 (306-377)||(5890603-5890674)
[»] chr2 (1 HSPs)
chr2 (37-80)||(4522751-4522794)
[»] chr6 (1 HSPs)
chr6 (38-71)||(20862550-20862583)


Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 1965841 - 1965298
Alignment:
Q  1 tgttatttgtagaaagaaatagggtgaattgttatactttattcatcagtcaagagactgcttatatagagcgattacaaataataataataatgatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1965841 tgttatttgtagaaagaaatagggtgaattgttatactttattcatcagtcaagagactgcttatatagagcgattacaaataataataataatgatgat 1965742  T
Q  101 gataattctgaatgacaattttagggaaacaaaaataaagagacaataaataggaagaagatatgcattataagaatcatgtggattctcatagaagaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1965741 gataattctgaatgacaattttagggaaacaaaaataaagagacaataaataggaagaagatatgcattataagaatcatgtggattctcctagaagaca 1965642  T
Q  201 cacactattccaacattattccaatgaaaaaacagaatgactataatggttnnnnnnnnnnnntattagcaaaagcattcgttaaatctagttttcctgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||    
T  1965641 cacactattccaacattattccaatgaaaaaacagaatgactataatggttaaaaaagaaaaatattagcaaaagcattcgttaaatctagttttcctgc 1965542  T
Q  301 accaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaactccttcatat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1965541 accaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaactccttcatat 1965442  T
Q  401 tattgtgcaatttctcacactcttctccttccattagacacttgatcaccttagcaacctccacccattcgacaataccgttttcgttaactcttggtct 500  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1965441 tattgtgcaatttctcacactcttctccttccatgagacacttgatcaccttagcaacctccaccctttcgacaataccgttttcgttaactcttggtct 1965342  T
Q  501 cagtcccactttaaggcccccagtcatcaaaactgcattcattc 544  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  1965341 cagtcccactttaaggcccccagtcaccaaaactgcattcattc 1965298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 544
Target Start/End: Original strand, 2010855 - 2011396
Alignment:
Q  3 ttatttgtagaaagaaatagggtgaat--tgttatactttattcatcagtcaagagactgcttatatagagcgattacaaataataataataatgatgat 100  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||| || | ||| ||| |||||||||||||||||||||||                 
T  2010855 ttatttgtagaaagaaatagggtgaatattgttatactttattcatcagttaatatactacttgtatagagcgattacaaataataac------------ 2010942  T
Q  101 gataattctgaatgacaattttagggaaacaaa---aataaagagacaataaataggaaga------agatatgcattat----aagaatcatgtggatt 187  Q
    ||||||||||||||| ||||  ||||||| |||   |||||||||||||||||| ||||||      ||||||||||||     ||||||||||||||||    
T  2010943 gataattctgaatgagaattc-agggaaaaaaatcaaataaagagacaataaattggaagatacagaagatatgcattaactaaaagaatcatgtggatt 2011041  T
Q  188 ctcatagaagacacacactattccaacattattccaatgaaaaaacagaatgactataatggttnnnnnnnnnnnntattagcaaaagcattcgttaaat 287  Q
    ||| |||||||| | ||  ||||||||||||||||||||||||| |||||||||||||||||||            |||||||||||| |||| ||||||    
T  2011042 ctcctagaagactcgcag-attccaacattattccaatgaaaaa-cagaatgactataatggttaaaaaagaaaaatattagcaaaagaattccttaaat 2011139  T
Q  288 ctagttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactcctttt 387  Q
    || ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  2011140 ctggtttttctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaagcaacttctttt 2011239  T
Q  388 aactccttcatattattgtgcaatttctcacactcttctccttccattagacacttgatcaccttagcaacctccacccattcgacaataccgttttcgt 487  Q
    || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||| |||||||    
T  2011240 aattccttcatattattgtgcaatttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaataccattttcgt 2011339  T
Q  488 taactcttggtctcagtcccactttaaggcccccagtcatcaaaactgcattcattc 544  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||    
T  2011340 taactcttggcctcagtcccactttaaggccctcagtcaccaaaactgcattcattc 2011396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 290 - 550
Target Start/End: Complemental strand, 1969494 - 1969234
Alignment:
Q  290 agttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaa 389  Q
    ||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||||||||| ||||||||||||| |||||| |||||| || |||||||    
T  1969494 agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa 1969395  T
Q  390 ctccttcatattattgtgcaatttctcacactcttctccttccattagacacttgatcaccttagcaacctccacccattcgacaataccgttttcgtta 489  Q
     |||||||| |||||| |||| |||||||  |||||||||||||| |||| ||||||||||||| |||||||  | | ||| ||||| |||||||| |||    
T  1969394 ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta 1969295  T
Q  490 actcttggtctcagtcccactttaaggcccccagtcatcaaaactgcattcattctctgct 550  Q
    |||||||| |||||||||||||| |||||  || ||| |||||| ||||||||| ||||||    
T  1969294 actcttggcctcagtcccacttttaggccttcactcagcaaaacggcattcattttctgct 1969234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 290 - 550
Target Start/End: Original strand, 2007527 - 2007787
Alignment:
Q  290 agttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaa 389  Q
    |||||| || |||||||||||||||||| |||| || |||||| ||||| ||||||||||| ||||||||||||| |||||| |||||| || |||||||    
T  2007527 agtttttctacaccaaatttctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaa 2007626  T
Q  390 ctccttcatattattgtgcaatttctcacactcttctccttccattagacacttgatcaccttagcaacctccacccattcgacaataccgttttcgtta 489  Q
     |||||||| |||||| | |||||||||| ||| ||||||||||| ||| |||||||||||||||||||||| |||| ||| || || || ||||| |||    
T  2007627 ttccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcatta 2007726  T
Q  490 actcttggtctcagtcccactttaaggcccccagtcatcaaaactgcattcattctctgct 550  Q
    || ||||  |||||||||||||| || ||  || ||| |||||| ||||||||| ||||||    
T  2007727 acacttgccctcagtcccacttttagtccttcactcaacaaaaccgcattcattttctgct 2007787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 291 - 550
Target Start/End: Original strand, 2004148 - 2004407
Alignment:
Q  291 gttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaac 390  Q
    |||||||| ||| ||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||  ||||| ||||||  | |||||||     
T  2004148 gttttcctacactaaatttctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattcttttaat 2004247  T
Q  391 tccttcatattattgtgcaatttctcacactcttctccttccattagacacttgatcaccttagcaacctccacccattcgacaataccgttttcgttaa 490  Q
    |||||||| |||||| ||||||||||||  ||||| |||||||| |||||||||||||||||||||||||| |||| ||| || || || ||||| ||||    
T  2004248 tccttcatgttattgcgcaatttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgccattttcattaa 2004347  T
Q  491 ctcttggtctcagtcccactttaaggcccccagtcatcaaaactgcattcattctctgct 550  Q
    | ||||  |||| ||||||||| || ||  || ||| |||||| ||||||||| ||||||    
T  2004348 cacttgccctcaatcccacttttagtccttcactcaacaaaaccgcattcattttctgct 2004407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 270 - 550
Target Start/End: Complemental strand, 2437308 - 2437034
Alignment:
Q  270 caaaagcattcgttaaatctagttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgca 369  Q
    ||||| ||||| ||||| || |||||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  2437308 caaaatcattccttaaaacttgttttcctgcaccaagcttctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatcttctttgagtgca 2437209  T
Q  370 ttggaagcaactccttttaactccttcatattattgtgcaatttctcacactcttctccttccattagacacttgatcaccttagcaacctccacccatt 469  Q
    || |||||| || ||||||  || |||||||||   | || |||       |||||||||||||| |||||||||||||||||||||||||| |||| ||    
T  2437208 ttagaagcagcttcttttagttctttcatatta--ctccacttt----agttcttctccttccatgagacacttgatcaccttagcaacctctacccttt 2437115  T
Q  470 cgacaataccgttttcgttaactcttggtctcagtcccactttaaggcccccagtcatcaaaactgcattcattctctgct 550  Q
    | ||||| || ||||| | ||||||||| |||||||||||||| || ||| || ||| |||||| | |||| |||||||||    
T  2437114 ccacaatgccattttcatgaactcttggcctcagtcccacttttagtccctcactcaacaaaaccgaattcgttctctgct 2437034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 310 - 518
Target Start/End: Complemental strand, 1963862 - 1963654
Alignment:
Q  310 ctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaactccttcatattattgtgca 409  Q
    ||||||||||||| ||||||||| | ||||||||||| ||| |||||||||||  || || |   |||| || |||| || ||||||||||||||  |||    
T  1963862 ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca 1963763  T
Q  410 atttctcacactcttctccttccattagacacttgatcaccttagcaacctccacccattcgacaataccgttttcgttaactcttggtctcagtcccac 509  Q
     |||| |||  ||||| |||||||| ||||||||||||| || |||||  || |||| ||| ||||| || || |||||||||||||| |||||||||||    
T  1963762 gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac 1963663  T
Q  510 tttaaggcc 518  Q
    ||| |||||    
T  1963662 ttttaggcc 1963654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 446
Target Start/End: Original strand, 2017941 - 2018086
Alignment:
Q  301 accaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaactccttcatat 400  Q
    |||||||||||||||||||||| ||||||||| |  ||||||||| |||||||||| |||||  ||||| |   ||||  | ||||||| ||||||||||    
T  2017941 accaaatttctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatgtgcactattagcagattcttttaattccttcatat 2018040  T
Q  401 tattgtgcaatttctcacactcttctccttccattagacacttgat 446  Q
    | ||| ||| |||| |||  ||||| |||||||| |||||||||||    
T  2018041 ttttgcgcagtttcccaccttcttccccttccatgagacacttgat 2018086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 1945420 - 1945385
Alignment:
Q  135 ataaagagacaataaataggaagaagatatgcatta 170  Q
    ||||||||||||||||||||||||||||||||||||    
T  1945420 ataaagagacaataaataggaagaagatatgcatta 1945385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 1945482 - 1945435
Alignment:
Q  3 ttatttgtagaaagaaatagggtga-attgttatactttattcatcag 49  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  1945482 ttatttgtagaaagaaatagggtaatattgttatactttattcatcag 1945435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 23269133 - 23269096
Alignment:
Q  340 tttgtagaagatccatcttctttgagtgcattggaagc 377  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  23269133 tttgtagaagaaccatcttctttgagtgcattagaagc 23269096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 270 - 550
Target Start/End: Complemental strand, 5903078 - 5902798
Alignment:
Q  270 caaaagcattcgttaaatctagttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgca 369  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||| || |||||| ||||||| || ||||||||||| |||    
T  5903078 caaaatcattccttaaagctagttttcatgcaccaaatttctccacttgagtgctaattgagaaatggtctttctagaagacccgtcttctttgagcgca 5902979  T
Q  370 ttggaagcaactccttttaactccttcatattattgtgcaatttctcacactcttctccttccattagacacttgatcaccttagcaacctccacccatt 469  Q
    || | || | || ||||||| ||||||||||||||| |||| |||||||| |||||||||||||| |||| ||||||||  |||| ||  ||| ||| ||    
T  5902978 ttagtagaagcttcttttaattccttcatattattgcgcaaattctcacattcttctccttccatgagacccttgatcaatttagaaatttcctcccttt 5902879  T
Q  470 cgacaataccgttttcgttaactcttggtctcagtcccactttaaggcccccagtcatcaaaactgcattcattctctgct 550  Q
    | ||||| || || || ||||| ||||| ||||||||||||||||||||| || ||| || ||||||||||||||| ||||    
T  5902878 caacaatgccattatcattaacccttggcctcagtcccactttaaggccctcactcagcacaactgcattcattctttgct 5902798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 270 - 550
Target Start/End: Complemental strand, 5906562 - 5906282
Alignment:
Q  270 caaaagcattcgttaaatctagttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgca 369  Q
    ||||| ||||| ||||| ||||||||| |||||||||||| |||||||| ||| ||||||||| | ||||||| ||||||| ||||||||||  ||||||    
T  5906562 caaaatcattccttaaagctagttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttcttgaagtgca 5906463  T
Q  370 ttggaagcaactccttttaactccttcatattattgtgcaatttctcacactcttctccttccattagacacttgatcaccttagcaacctccacccatt 469  Q
    || | |||  || |||| || ||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||| | || ||    
T  5906462 ttagtagctgcttctttcaattccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttagaaacctctatccttt 5906363  T
Q  470 cgacaataccgttttcgttaactcttggtctcagtcccactttaaggcccccagtcatcaaaactgcattcattctctgct 550  Q
    | ||||| || ||||| ||||||||||| |||| |||||| || |||||| || ||| || || |||||||||||||||||    
T  5906362 ccacaatgccattttcattaactcttggcctcactcccacctttaggccctcactcagcacaaatgcattcattctctgct 5906282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 35828220 - 35828081
Alignment:
Q  8 tgtagaaagaaatagggtgaat--tgttatactttattcatcagtcaagagactgcttatatagagcgattacaaataataataataatgatgatgataa 105  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||           ||||| ||||    
T  35828220 tgtagaaagaaatagggtgaatgttgttatgctttattcatcagtcaagaggctgcttatatagagc-attac-aataa-----------atgataataa 35828134  T
Q  106 ttctgaatgacaattttagggaaacaaaaataaagagacaataaataggaaga 158  Q
    |||| ||||| ||| ||||| ||| ||||||||||||||||||||||||||||    
T  35828133 ttctcaatgagaatattaggaaaataaaaataaagagacaataaataggaaga 35828081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 5890603 - 5890674
Alignment:
Q  306 atttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagc 377  Q
    ||||||||||||||||| ||||||||| | | | ||||||||||| |||||||||||||||||||| |||||    
T  5890603 atttctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttctttgagtgcattagaagc 5890674  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 4522751 - 4522794
Alignment:
Q  37 ctttattcatcagtcaagagactgcttatatagagcgattacaa 80  Q
    |||||||||||||||||||||||||||||||||||  |||||||    
T  4522751 ctttattcatcagtcaagagactgcttatatagaggaattacaa 4522794  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 20862583 - 20862550
Alignment:
Q  38 tttattcatcagtcaagagactgcttatatagag 71  Q
    ||||||||||||||||||||||| ||||||||||    
T  20862583 tttattcatcagtcaagagactggttatatagag 20862550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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