View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_low_17 (Length: 529)

Name: NF20539_low_17
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_low_17
NF20539_low_17
[»] chr2 (6 HSPs)
chr2 (9-504)||(42477000-42477508)
chr2 (68-376)||(34523902-34524211)
chr2 (68-301)||(22468283-22468514)
chr2 (68-301)||(22474504-22474735)
chr2 (66-299)||(35651368-35651599)
chr2 (293-377)||(22466896-22466980)
[»] chr8 (8 HSPs)
chr8 (66-353)||(30793692-30793977)
chr8 (244-377)||(34228352-34228485)
chr8 (9-69)||(30791457-30791517)
chr8 (10-69)||(21958628-21958687)
chr8 (36-69)||(10467867-10467900)
chr8 (36-72)||(10014461-10014497)
chr8 (9-69)||(13152393-13152453)
chr8 (9-69)||(16532631-16532690)
[»] chr1 (2 HSPs)
chr1 (68-376)||(21976104-21976413)
chr1 (9-69)||(52753819-52753879)
[»] chr6 (5 HSPs)
chr6 (103-353)||(22257538-22257786)
chr6 (75-363)||(24696035-24696321)
chr6 (68-286)||(24697417-24697633)
chr6 (9-68)||(11971076-11971135)
chr6 (36-69)||(32442000-32442033)
[»] scaffold0168 (1 HSPs)
scaffold0168 (68-376)||(13364-13673)
[»] chr5 (3 HSPs)
chr5 (68-376)||(26542962-26543271)
chr5 (9-69)||(22542002-22542062)
chr5 (9-66)||(2229034-2229091)
[»] scaffold0769 (1 HSPs)
scaffold0769 (68-376)||(1939-2248)
[»] scaffold0012 (1 HSPs)
scaffold0012 (68-377)||(194664-194964)
[»] chr7 (8 HSPs)
chr7 (68-319)||(26503351-26503602)
chr7 (68-319)||(26589112-26589363)
chr7 (68-325)||(38577636-38577885)
chr7 (9-69)||(26493713-26493773)
chr7 (10-69)||(19400094-19400153)
chr7 (10-69)||(27387306-27387365)
chr7 (10-60)||(38575289-38575339)
chr7 (261-321)||(34224476-34224536)
[»] chr3 (6 HSPs)
chr3 (68-328)||(31986656-31986908)
chr3 (68-281)||(53708012-53708223)
chr3 (10-69)||(24908393-24908452)
chr3 (10-69)||(53710514-53710573)
chr3 (10-68)||(51408609-51408667)
chr3 (10-69)||(31989145-31989204)
[»] scaffold0019 (1 HSPs)
scaffold0019 (9-69)||(134853-134913)
[»] scaffold0015 (1 HSPs)
scaffold0015 (10-69)||(214161-214220)
[»] chr4 (2 HSPs)
chr4 (9-67)||(25182878-25182936)
chr4 (263-299)||(12211398-12211434)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-69)||(260034-260094)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 504
Target Start/End: Complemental strand, 42477508 - 42477000
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttccaaattgagtacgaggaaaacatggcaaatttgattgcaa 108  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||     
T  42477508 gagatgaaatgtaacctgtcgataacatgctaaataaaattaagaggtaagtaccctttccgaattgagtacgaggaaaacatggcaaatttggttgcat 42477409  T
Q  109 tggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacatatgaatttgtt-------------ttctaagatttggatca 195  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||             |||||||||||||||||    
T  42477408 tggacccttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacacatgaatttgttacatgaatttgttttctaagatttggatca 42477309  T
Q  196 cgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaatatttgttc 295  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||    
T  42477308 cgcacaatctcatttggattaaacttgttggtcacattaggcggtggttcttctacttcgcctttcggttgcacaacattcacattctcattatttattc 42477209  T
Q  296 tatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgacataacaagtttaaaaaataacgacattcaagcagccttt 395  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  42477208 tatctatcaaaaacctcctcatctctgaaatttaatgattcaagattaatattcaattcacataacaagtttaaaaaataacgacatacaaccagccttt 42477109  T
Q  396 gaagcaagcaaacaagaccaaaaaagaacaaaactcttaatagttaacaagggaaattagagctaatactattctttaacagttaacagttttgttcctt 495  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42477108 gaagcaagcaaacaagaccaaaaaagaacaaaactcttaacagttaacaagggaaattagagctaatactattctttaacagttaacagttttgttcctt 42477009  T
Q  496 aactgtaaa 504  Q
    |||||||||    
T  42477008 aactgtaaa 42477000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 68 - 376
Target Start/End: Complemental strand, 34524211 - 34523902
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||||||||||||||||||| || | |||||| |||   |||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||      
T  34524211 ccaaattgagtacgaggaaaacttgcctaatttggttgtgttggacccttcaatatatatg--ccctcctcacttggtcttgaatatccggagcatactc 34524114  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
       ||||||||| ||||||   |||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||||  || |||||||    
T  34524113 ccaaatttgtttcctaagacccggatcacgcacaatctcatttggattaaactcattgaccacattaggcggtggttcttcttcttcggtttccggttgc 34524014  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaag 364  Q
    |||||||| |||||||| ||  |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||    
T  34524013 acaacatttacattctcgatccttgttctatctaccaaaaacttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataataacaag 34523914  T
Q  365 tttaaaaaataa 376  Q
    ||||||||||||    
T  34523913 tttaaaaaataa 34523902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 68 - 301
Target Start/End: Complemental strand, 22468514 - 22468283
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||||||||||||||||||| || |||||||| ||||  |||||| |||||||||||||  ||||| ||||||||||||||||||| |||||||||      
T  22468514 ccaaattgagtacgaggaaaacttgccaaatttggttgcgttggacccttcaatatatatg--ccctcctcacttggtcttgaatatctggagcatactc 22468417  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
       ||||||||| ||||||  |||||| |||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||  || |||||||    
T  22468416 ccaaatttgtttcctaagacctggatcgcgcacaatctcatttggattaaactcattggccacattaggcggtggtttttctacttcggcttccggttgc 22468317  T
Q  268 acaacattcacattctcaatatttgttctatcta 301  Q
    |||||||| |||||||||||  ||||||||||||    
T  22468316 acaacatttacattctcaatccttgttctatcta 22468283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 68 - 301
Target Start/End: Complemental strand, 22474735 - 22474504
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||||||||||||||||||| || |||||||| ||||  |||||| |||||||||||||  ||||| ||||||||||||||||||| |||||||||      
T  22474735 ccaaattgagtacgaggaaaacttgccaaatttggttgcgttggacccttcaatatatatg--ccctcctcacttggtcttgaatatctggagcatactc 22474638  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
       ||||||||| ||||||  |||||| |||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||  || |||||||    
T  22474637 ccaaatttgtttcctaagacctggatcgcgcacaatctcatttggattaaactcattggccacattaggcggtggtttttctacttcggcttccggttgc 22474538  T
Q  268 acaacattcacattctcaatatttgttctatcta 301  Q
    |||||||| |||||||||||  ||||||||||||    
T  22474537 acaacatttacattctcaatccttgttctatcta 22474504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 66 - 299
Target Start/End: Original strand, 35651368 - 35651599
Alignment:
Q  66 ttccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatac 165  Q
    |||||||||||| | ||||||||| ||||||||||  ||||| |||||  |||||||||||||  ||||| |||||||||||||||||| || |||||||    
T  35651368 ttccaaattgagcatgaggaaaacttggcaaattttgttgcattggactcttcaatatatatg--ccctcctcacttggtcttgaatattcgtagcatac 35651465  T
Q  166 atatgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggtt 265  Q
      |||||||||||| |||| |    |||||||||||||||||||||||||||| |  |||||  |||||| |||||||||||||||||||  || || ||    
T  35651466 gcatgaatttgtttcctaataccgagatcacgcacaatctcatttggattaaattcattggctccattaggcggtggttcttctacttcggcttccgatt 35651565  T
Q  266 gcacaacattcacattctcaatatttgttctatc 299  Q
    |||||||||||||||||| |||| ||||||||||    
T  35651566 gcacaacattcacattctgaatacttgttctatc 35651599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 22466980 - 22466896
Alignment:
Q  293 ttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgacataacaagtttaaaaaataac 377  Q
    ||||||||| ||||||| |||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||||||    
T  22466980 ttctatctaccaaaaacttcctcatctctgaaatttaatgattcaaagtgaatattcaatttacataacaagtttaaaaaataac 22466896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 5e-88; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 66 - 353
Target Start/End: Original strand, 30793692 - 30793977
Alignment:
Q  66 ttccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatac 165  Q
    |||||||||||||||||||||||| ||  ||||||| ||||| |||||| |||||||||||||  ||||| |||| | ||||||||||||||||||||||    
T  30793692 ttccaaattgagtacgaggaaaacttgaaaaatttggttgcattggacccttcaatatatatg--ccctcctcacatcgtcttgaatatccggagcatac 30793789  T
Q  166 atatgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggtt 265  Q
    | |||||||||||| ||||||  ||||||||||| |||||||||||||| |||||  ||||||| ||||| || ||||||||||||||||  || |||||    
T  30793790 aaatgaatttgtttcctaagacctggatcacgcaaaatctcatttggatgaaactcattggccaaattaggcgatggttcttctacttcggcttccggtt 30793889  T
Q  266 gcacaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaatt 353  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  30793890 gcacaacattcacattctcaatatttgttctattaatcaaaaacctcctcatgtctgaaatttaatggtccaaagttaatattcaatt 30793977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 244 - 377
Target Start/End: Original strand, 34228352 - 34228485
Alignment:
Q  244 tcttctacttcgcatttcggttgcacaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggtta 343  Q
    ||||||||||||  || | |||| ||||||||| |||| ||||||||| ||||||| | ||||||| || |||||||| |||||||||||||||| ||||    
T  34228352 tcttctacttcggcttccagttgtacaacattcgcattttcaatatttattctatcaaccaaaaacatcttcatctctaaaatttaatgatccaaagtta 34228451  T
Q  344 atattcaattgacataacaagtttaaaaaataac 377  Q
    ||||||||   ||||| |||||| ||||||||||    
T  34228452 atattcaagacacatagcaagttcaaaaaataac 34228485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 30791457 - 30791517
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    |||||||||| ||||||||| ||||| ||||||||||||||| | ||||||| ||||||||    
T  30791457 gagatgaaatataacctgtcaatagcgtgctaaataaaattaggtggtaaatgccctttcc 30791517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 21958687 - 21958628
Alignment:
Q  10 agatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    ||||||||| ||||||| | ||||| ||||||||||||||| ||||||||| ||||||||    
T  21958687 agatgaaatataacctgccaatagcgtgctaaataaaattaggaggtaaattccctttcc 21958628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 10467900 - 10467867
Alignment:
Q  36 tgctaaataaaattaagaggtaaataccctttcc 69  Q
    ||||||||||||||| ||||||||||||||||||    
T  10467900 tgctaaataaaattatgaggtaaataccctttcc 10467867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 10014461 - 10014497
Alignment:
Q  36 tgctaaataaaattaagaggtaaataccctttccaaa 72  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  10014461 tgctaaataaaattaggaggtaaatgccctttccaaa 10014497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 13152393 - 13152453
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    |||||||||  |||| |||| ||||  ||||||||||||||| ||||||||| ||||||||    
T  13152393 gagatgaaacataacttgtcaatagtgtgctaaataaaattaggaggtaaatgccctttcc 13152453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 16532631 - 16532690
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    |||||||||| ||||| | | ||||| ||||||||||||||| ||||||||| ||||||||    
T  16532631 gagatgaaatataaccag-caatagcgtgctaaataaaattaggaggtaaatgccctttcc 16532690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 68 - 376
Target Start/End: Original strand, 21976104 - 21976413
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||||||||||||||||||| |  |||||||| |||   |||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||      
T  21976104 ccaaattgagtacgaggaaaacttaccaaatttggttgtgttggacccttcaatatatatg--ccctcctcacttggtcttgaatatccggagcatactc 21976201  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
       ||||||||| ||||||  ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||  || |||||||    
T  21976202 ccaaatttgtttcctaagacctggatcacgcacaatctcatttggattaaactcattggccacattaggcggtggttcttctacttcggtttccggttgc 21976301  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaag 364  Q
    |||||||| |||||||||||  |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||    
T  21976302 acaacatttacattctcaatccttgttctatctaccaaaaacttcctcatctctgaaatttaaagattcaaagtgaatattcaatttacataataacaag 21976401  T
Q  365 tttaaaaaataa 376  Q
    ||||||||||||    
T  21976402 tttaaaaaataa 21976413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 52753819 - 52753879
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    |||||||||  |||| |||| ||||  ||||| ||||||||| ||||||||||||||||||    
T  52753819 gagatgaaacataacttgtcaatagtgtgctagataaaattaggaggtaaataccctttcc 52753879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 3e-80; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 103 - 353
Target Start/End: Original strand, 22257538 - 22257786
Alignment:
Q  103 ttgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacatatgaatttgttttctaagatttggatcacgcacaa 202  Q
    ||||| |||||| |||||||||||||  ||||| |||| | ||||||||||||||||||||||| |||||||||||| ||||||  ||||||| ||||||    
T  22257538 ttgcattggacccttcaatatatatg--ccctcctcacatcgtcttgaatatccggagcatacaaatgaatttgtttcctaagacctggatcatgcacaa 22257635  T
Q  203 tctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacattcacattctcaatatttgttctatctat 302  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||||  || |||||||||||||||| ||||||||||| |||||||||| |     
T  22257636 tctcatttggattaaactcattggccacattaggcggtggttcttctacttcggcttccggttgcacaacattcgcattctcaatacttgttctatcaac 22257735  T
Q  303 caaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaatt 353  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  22257736 caaaaacctcctcatctctgaaatttaatggtccaaagttaatattcaatt 22257786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 75 - 363
Target Start/End: Complemental strand, 24696321 - 24696035
Alignment:
Q  75 gagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacatatgaatt 174  Q
    ||||||||||||| | ||  || |||| ||| | |||||| ||||||| ||||||  | || |||||| |||| |||||||||||||||||| |||||||    
T  24696321 gagtacgaggaaatcttgttaattttggttgtattggacccttcaatacatatgt--cgtcctcacttcgtctcgaatatccggagcatacaaatgaatt 24696224  T
Q  175 tgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgcacaacat 274  Q
    ||||| ||||||  ||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||   || ||||||||||||||    
T  24696223 tgtttcctaagacctggatcacgcacaatctcatttgaattaaacttattagccacaatagacggtggttcttctacttcaacttccggttgcacaacat 24696124  T
Q  275 tcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgacataacaa 363  Q
    |||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||| || ||| |||||||||||||| |||||||||    
T  24696123 tcacattctcaatacttgttctatttaccaaaaacctcctcatctctgagatttaatcattcaaagttaatattcaattcacataacaa 24696035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 68 - 286
Target Start/End: Original strand, 24697417 - 24697633
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||| ||||||||||||||| ||  || |||| ||||| | |||| ||||||| |||||  || || |||||| |||| ||||||||||||||||||     
T  24697417 ccaaatggagtacgaggaaaacttgttaattttggttgcattagacccttcaatacatatg--ccgtcctcacttcgtctcgaatatccggagcatacag 24697514  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
    |||||||||||| ||||||  ||||||||||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||||||  || |||||||    
T  24697515 atgaatttgtttcctaagacctggatcacgcacaatctcatttgaattaaactcattggccacattagacggtgattcttctacttcggcttccggttgc 24697614  T
Q  268 acaacattcacattctcaa 286  Q
    |||||||||||||||||||    
T  24697615 acaacattcacattctcaa 24697633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 11971135 - 11971076
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttc 68  Q
    |||||||||  ||||||||| ||||  ||||||||||||||| ||||||||| |||||||    
T  11971135 gagatgaaacataacctgtcaatagtgtgctaaataaaattaggaggtaaatgccctttc 11971076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 32442000 - 32442033
Alignment:
Q  36 tgctaaataaaattaagaggtaaataccctttcc 69  Q
    ||||||||||||||||||||||||| ||||||||    
T  32442000 tgctaaataaaattaagaggtaaatgccctttcc 32442033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 68 - 376
Target Start/End: Complemental strand, 13673 - 13364
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||||||||||||||||||| || |||||||| |||   |||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||      
T  13673 ccaaattgagtacgaggaaaacttgccaaatttggttgtgttggacccttcaatatatatg--ccctcctcacttggtcttgaatatccggagcatactc 13576  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
       ||||||||| ||||||  ||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||  || |||||||    
T  13575 ccaaatttgtttcctaagacctggatcacgcacaatctcatttggattaaactcattgaccacattaggcggtggttcttctacttcggtttccggttgc 13476  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaag 364  Q
    |||||||| |||||||| ||  |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||    
T  13475 acaacatttacattctcgatccttgttctatctaccaaaaacttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataataacaag 13376  T
Q  365 tttaaaaaataa 376  Q
    ||||||||||||    
T  13375 tttaaaaaataa 13364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 68 - 376
Target Start/End: Original strand, 26542962 - 26543271
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||||||||||||||||||| || |||||||| |||   |||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||      
T  26542962 ccaaattgagtacgaggaaaacttgccaaatttggttgtgttggacccttcaatatatatg--ccctcctcacttggtcttgaatatccggagcatactc 26543059  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
       ||||||||| ||||||  ||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||  || |||||||    
T  26543060 ccaaatttgtttcctaagacctggatcacgcacaatctcatttggattaaactcattgaccacattaggcggtggttcttctacttcggtttccggttgc 26543159  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaag 364  Q
    |||||||| |||||||| ||  |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||    
T  26543160 acaacatttacattctcgatccttgttctatctaccaaaaacttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataataacaag 26543259  T
Q  365 tttaaaaaataa 376  Q
    ||||||||||||    
T  26543260 tttaaaaaataa 26543271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 22542062 - 22542002
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    |||| ||||| ||||||| | ||||| ||||||||||||||| ||||||||| ||||||||    
T  22542062 gagaagaaatataacctgacaatagcgtgctaaataaaattatgaggtaaatgccctttcc 22542002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 2229091 - 2229034
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctt 66  Q
    |||||||||| ||||||  | ||||| ||||||||||||||| ||||||||| |||||    
T  2229091 gagatgaaatataacctaccaatagcgtgctaaataaaattaggaggtaaatgccctt 2229034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 68 - 376
Target Start/End: Complemental strand, 2248 - 1939
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||||||||||||||||||| || |||||||| |||   |||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||      
T  2248 ccaaattgagtacgaggaaaacttgccaaatttggttgtgttggacccttcaatatatatg--ccctcctcacttggtcttgaatatccggagcatactc 2151  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
       ||||||||| ||||||   |||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||||  || |||||||    
T  2150 ccaaatttgtttcctaagacccggatcacgcacaatctcatttggattaaactcattgaccacattaggcggtggttcttctgcttcggtttccggttgc 2051  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgac---ataacaag 364  Q
    |||||||| |||||||| ||  |||||||||||| ||||||| |||||||||||||||||||| ||| ||| || ||||||||||| ||   ||||||||    
T  2050 acaacatttacattctcgatccttgttctatctaccaaaaacttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataataacaag 1951  T
Q  365 tttaaaaaataa 376  Q
    ||||||||||||    
T  1950 tttaaaaaataa 1939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 68 - 377
Target Start/End: Complemental strand, 194964 - 194664
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||||||||||||||||||| || |||||||| ||||  | |||| |||||||||||||  || || |||||||||||||||||||||||||||||      
T  194964 ccaaattgagtacgaggaaaacttgccaaatttggttgcgttagacccttcaatatatatg--ccttcctcacttggtcttgaatatccggagcatactc 194867  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
       ||||||||| ||||||  |||||||||||||||||||||||| | |      ||||||||||||| |||||||||||||||||||  || |||||||    
T  194866 ccaaatttgtttcctaagacctggatcacgcacaatctcatttggctca------ttggccacattaggcggtggttcttctacttcgg-ttccggttgc 194774  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaatttaatgatccaaggttaatattcaattgacataacaagttt 367  Q
    |||||||| |||||||||||  |||||||||||| ||||||  |||||||||||||||||||| ||| ||| || ||||||||||| |||||||||||||    
T  194773 acaacatttacattctcaatccttgttctatctaccaaaaatttcctcatctctgaaatttaacgattcaaagtgaatattcaatttacataacaagttt 194674  T
Q  368 aaaaaataac 377  Q
    ||||||||||    
T  194673 aaaaaataac 194664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 68 - 319
Target Start/End: Complemental strand, 26503602 - 26503351
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||| ||||||||||||||| |   || |||| ||||| |||||| ||||||| |||| ||||||| |||| | |||||||||||||||||||||||     
T  26503602 ccaaatggagtacgaggaaaactttttaattttggttgcattggacccttcaatacatatatgccctcctcacatcgtcttgaatatccggagcatacaa 26503503  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
    |||||||||||| ||||||  ||||||||||||||||||||| ||||||||||  ||||| ||||||| || || |||||||||||||  || ||||||     
T  26503502 atgaatttgtttcctaagacctggatcacgcacaatctcattcggattaaactcattggctacattaggcgatgtttcttctacttcgggttccggttgg 26503403  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatct 319  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||||    
T  26503402 acaacattcacattctcaataattgttctatctaccaaaaaccttctcatct 26503351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 68 - 319
Target Start/End: Original strand, 26589112 - 26589363
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||| ||||||||||||||| |   || |||| ||||| |||||| ||||||| |||| ||||||| |||| | |||||||||||||||||||||||     
T  26589112 ccaaatggagtacgaggaaaactttttaattttggttgcattggacccttcaatacatatatgccctcctcacatcgtcttgaatatccggagcatacaa 26589211  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
    |||||||||||| ||||||  ||||||||||||||||||||| ||||||||||  ||||| ||||||| || || |||||||||||||  || ||||||     
T  26589212 atgaatttgtttcctaagacctggatcacgcacaatctcattcggattaaactcattggctacattaggcgatgtttcttctacttcgggttccggttgg 26589311  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatct 319  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||||    
T  26589312 acaacattcacattctcaataattgttctatctaccaaaaaccttctcatct 26589363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 68 - 325
Target Start/End: Original strand, 38577636 - 38577885
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||| |||||||| |||||| || |||||||| ||||| |||||| ||||| |||||||  ||||| |||||||||||||||||| |||||||||  |    
T  38577636 ccaaatagagtacgaagaaaacttgacaaatttggttgcattggacccttcaagatatatg--ccctcctcacttggtcttgaatattcggagcatatgt 38577733  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
    |||||||||||| ||| ||  ||||||||| | ||||||| ||||||||||||  |||||||||||||  |||||||||||||||| |  || |||||||    
T  38577734 atgaatttgtttcctacgacctggatcacgtataatctcaattggattaaactcattggccacattaggtggtggttcttctactttggcttccggttgc 38577833  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaa 325  Q
    |||||||||||||      || |||||||||  | |||||| ||||||||||||||||    
T  38577834 acaacattcacat------tacttgttctattaaccaaaaatctcctcatctctgaaa 38577885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 26493713 - 26493773
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    |||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| ||||||||    
T  26493713 gagatgaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgccctttcc 26493773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 19400153 - 19400094
Alignment:
Q  10 agatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    ||||||||| ||||||| | ||||| ||||||||||||||| ||||||||||||||||||    
T  19400153 agatgaaatataacctgccaatagcgtgctaaataaaattaggaggtaaataccctttcc 19400094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 27387306 - 27387365
Alignment:
Q  10 agatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| | ||||||    
T  27387306 agatgaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgctctttcc 27387365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 38575289 - 38575339
Alignment:
Q  10 agatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaat 60  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| |||||||||    
T  38575289 agatgaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaat 38575339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 34224476 - 34224536
Alignment:
Q  261 cggttgcacaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctct 321  Q
    ||||| ||||||||||| |||||||||| ||||| |||| | ||||||| |||||||||||    
T  34224476 cggtttcacaacattcatattctcaatacttgttttatcaaccaaaaacttcctcatctct 34224536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 68 - 328
Target Start/End: Complemental strand, 31986908 - 31986656
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||| ||||||| ||||||| || |||||||| |||||  ||||| ||||| |||||||  ||||| ||||||||||||||||||||||||||||  |    
T  31986908 ccaaatagagtacgtggaaaacttgacaaatttggttgcatcggacccttcaagatatatg--ccctcctcacttggtcttgaatatccggagcatatgt 31986811  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
    |||||||||||| ||| ||  ||||||||| ||||||||||||||||||||||  |||||||||||||  ||||||||||||| ||||  || |||||||    
T  31986810 atgaatttgtttcctacgacctggatcacgtacaatctcatttggattaaactcattggccacattaggtggtggttcttctatttcggcttccggttgc 31986711  T
Q  268 acaacattcacattctcaatatttgttctatctatcaaaaacctcctcatctctgaaattt 328  Q
    |||||||||||||      || |||||||||| | |||||| |||||||||||||||||||    
T  31986710 acaacattcacat------tacttgttctatcaaccaaaaatctcctcatctctgaaattt 31986656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 68 - 281
Target Start/End: Complemental strand, 53708223 - 53708012
Alignment:
Q  68 ccaaattgagtacgaggaaaacatggcaaatttgattgcaatggacctttcaatatatatgtgccctcatcacttggtcttgaatatccggagcatacat 167  Q
    |||||| ||||||| ||||||| || |||||||| ||||| |||||| ||||| || ||||  ||||| ||||||||||||||||||||| ||||||  |    
T  53708223 ccaaatagagtacgtggaaaacttgacaaatttggttgcattggacccttcaagatttatg--ccctcctcacttggtcttgaatatccgtagcatatgt 53708126  T
Q  168 atgaatttgttttctaagatttggatcacgcacaatctcatttggattaaacttgttggccacattagacggtggttcttctacttcgcatttcggttgc 267  Q
    |||||||||||| ||| ||  ||||||||| ||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||  || |||||||    
T  53708125 atgaatttgtttcctacgacctggatcacgtacaatctcatttggattaaactcattggccacattaggtggtggttcttctacttcggcttccggttgc 53708026  T
Q  268 acaacattcacatt 281  Q
    ||||||||||||||    
T  53708025 acaacattcacatt 53708012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 24908393 - 24908452
Alignment:
Q  10 agatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    ||||||||| ||||||||  ||||| ||||||||||||||| ||||||||||||||||||    
T  24908393 agatgaaatataacctgtgaatagcgtgctaaataaaattaggaggtaaataccctttcc 24908452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 53710573 - 53710514
Alignment:
Q  10 agatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    |||| |||| ||||||||| ||||| ||||||||||||||| ||||||||| ||||||||    
T  53710573 agataaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgccctttcc 53710514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 51408609 - 51408667
Alignment:
Q  10 agatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttc 68  Q
    ||||||||| |||| |||| ||||| ||||||||||||||| ||||||||| |||||||    
T  51408609 agatgaaatataacatgtcaatagcgtgctaaataaaattaggaggtaaatgccctttc 51408667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 31989204 - 31989145
Alignment:
Q  10 agatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    ||||||||| ||||||||  || || ||||||||||||||| ||||||||| ||||||||    
T  31989204 agatgaaatataacctgttaatggcgtgctaaataaaattaggaggtaaatgccctttcc 31989145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 134853 - 134913
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    |||||||||| |||||| || ||||| ||||||||||||||| ||||||||| ||||||||    
T  134853 gagatgaaatataacctatcaatagcgtgctaaataaaattaggaggtaaatgccctttcc 134913  T

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Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 214161 - 214220
Alignment:
Q  10 agatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    ||||||||| ||||||| | ||||| ||||||||||||||| ||||||||| ||||||||    
T  214161 agatgaaatataacctgccaatagcgtgctaaataaaattaggaggtaaattccctttcc 214220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 25182878 - 25182936
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaatacccttt 67  Q
    |||||||||| |||||| || ||||  |||||||||||||||  |||||||||||||||    
T  25182878 gagatgaaatataacctatcaatagtgtgctaaataaaattagaaggtaaatacccttt 25182936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 12211398 - 12211434
Alignment:
Q  263 gttgcacaacattcacattctcaatatttgttctatc 299  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  12211398 gttgcacaacattcatattctcaatacttgttctatc 12211434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 260094 - 260034
Alignment:
Q  9 gagatgaaatgtaacctgtcgatagcatgctaaataaaattaagaggtaaataccctttcc 69  Q
    |||||||||| ||| ||||| ||||| ||||||||||||||| | ||||||| || |||||    
T  260094 gagatgaaatataatctgtcaatagcgtgctaaataaaattaggtggtaaatgccatttcc 260034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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