View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_low_19 (Length: 502)
Name: NF20539_low_19
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 89 - 488
Target Start/End: Complemental strand, 40718254 - 40717855
Alignment:
| Q |
89 |
gcttcagcaaaatgtgcatgcaaatcacgaactaatgcatgctgctgaaacaatttgtctagataaatgttgttaaccaatttaacttaactacttcaat |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40718254 |
gcttcagcaaaatgtgcatgcaaatcacgaactaatgcatgctgctgaaacaatttgtctagataaatgttgttaaccactttaacttaactacttcaat |
40718155 |
T |
|
| Q |
189 |
taatagatgaagaattgtaacaacttaaaagtcgaatcacttcaaaaacatgtatacaaataaatttcttgcacacatgcatgcgttgaatcatcatatg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40718154 |
taatagatgaagaattgtaacaacttaaaagtcgaatcacttcaaaaacatgtatacaaataaatttcttgcacacatgcatgcgttgaatcatcatatg |
40718055 |
T |
|
| Q |
289 |
aaacacgtaacaaatttatgtttttggggtatagagtcaacacacgcatctaaggaacaccaaaacggtcgagcccgctggcgcgtagtatcatatggta |
388 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40718054 |
aaacacgtaacaaatttatgtttttgaggtatagagtcaacacacgcatctaaggaacaccaaaactgtcgagcccgctggcgcgtagtatcatatggta |
40717955 |
T |
|
| Q |
389 |
tcccgcgatgcgggctaaagaataatgcacctttactctcctccatgaaatttctcattttccattgtggtggtgaaatatccattttgatatttcacaa |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40717954 |
tcccgcgatgcgggctaaagaataatgcacctttactctcctccatgaaatttctcattttccattgtggtggtgaaatatccattttgatatttcacaa |
40717855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 40718323 - 40718283
Alignment:
| Q |
26 |
tctcttaaatgcaatatcttgaatatgattaaaagactatg |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40718323 |
tctcttaaatgcaatatcttgaatatgattaaaagactatg |
40718283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University