View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_20 (Length: 497)
Name: NF20539_low_20
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 14433274 - 14433757
Alignment:
| Q |
1 |
catgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctctatgtaagattcatt |
100 |
Q |
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| T |
14433274 |
catgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaagtcaccacctctatgtaagattcatt |
14433373 |
T |
|
| Q |
101 |
tttatcatacacagcaacatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaacaaaattaaacacattg |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
14433374 |
tttatcatacacagcagcatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaataaaattaaacgcattg |
14433473 |
T |
|
| Q |
201 |
ttagttaaccttccttgcatggtcggcccaataaattttatttgtagatgagatctaaaacatattttaatatacgagacatttttagtctgtatacgag |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14433474 |
ttagttaaccttccttgcatggtcggcccagtaaattttatttgtaggtgagacctaaaacatattttaatatacgagacatttttagtctgtatacgag |
14433573 |
T |
|
| Q |
301 |
accattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaac |
400 |
Q |
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| T |
14433574 |
accattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagcgaac |
14433673 |
T |
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| Q |
401 |
aaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
484 |
Q |
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| T |
14433674 |
aaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
14433757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 14441631 - 14441754
Alignment:
| Q |
27 |
gagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctctatgtaagattcatttttatcatacacagcaacatcaccac |
126 |
Q |
| |
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||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| || |||| |||||||| |||| ||||||||| |
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| T |
14441631 |
gagttcaccactggtgttcgaagagtcccatcagggttgtttggggaggtcactacctctatgtaaggtttgttttcatcatacaaagcagcatcaccac |
14441730 |
T |
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| Q |
127 |
cccattgaaacatccttgaatgca |
150 |
Q |
| |
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|||||||||| | |||||| |||| |
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| T |
14441731 |
cccattgaaatagccttgattgca |
14441754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 474
Target Start/End: Original strand, 14443011 - 14443164
Alignment:
| Q |
321 |
gaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttg |
420 |
Q |
| |
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||||||| |||||||||||||||| || || ||||||||||||||| ||||||| | |||| ||||||| | ||| ||||| ||| | ||| ||||| |
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| T |
14443011 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
14443110 |
T |
|
| Q |
421 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
474 |
Q |
| |
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|| |||||||||||| | |||||| | |||||||| || ||| |||| ||||| |
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|
| T |
14443111 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaac |
14443164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 20626818 - 20626885
Alignment:
| Q |
228 |
ccaataaattttatttgtagatgagatctaaaacatattttaatatacgagacatttttagtctgtata |
296 |
Q |
| |
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| T |
20626818 |
ccaataaattttatttgtagacgagctttaaaacaaattttaa-atatgaggcttttttagtctgtata |
20626885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 32598355 - 32598443
Alignment:
| Q |
228 |
ccaataaattttatttgtagatgagatctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa |
316 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| ||||||||||| ||| |||||||||||| |||| || || |||||||||||| |
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| T |
32598355 |
ccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataa |
32598443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 21090503 - 21090454
Alignment:
| Q |
223 |
tcggcccaataaattttatttgtagatgagatctaaaacatattttaata |
272 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||||| || ||||||||| |
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| T |
21090503 |
tcggcccaataatttttatttgtagatgaggtctaaatcaaattttaata |
21090454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 24959857 - 24959905
Alignment:
| Q |
228 |
ccaataaattttatttgtagatgagatctaaaacatattttaatatacg |
276 |
Q |
| |
|
||||||| |||||||| ||| |||| ||||||||| ||||||||||||| |
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| T |
24959857 |
ccaataacttttatttttaggtgagttctaaaacaaattttaatatacg |
24959905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 17410097 - 17410044
Alignment:
| Q |
221 |
ggtcggcccaataaattttatttgtagatgagatctaaaacatattttaatata |
274 |
Q |
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|||||| ||||||| |||||||| ||| ||||||||| |||| ||||||||||| |
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| T |
17410097 |
ggtcggtccaataatttttatttttaggtgagatctataacaaattttaatata |
17410044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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