View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_22 (Length: 466)
Name: NF20539_low_22
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 4 - 451
Target Start/End: Complemental strand, 233990 - 233543
Alignment:
| Q |
4 |
ggagtagcataggtggatgtattaaataaaaggaaatgggtcctatataattttactaattaaaaggtgccggaagaatgaaacagcccaaagtgttact |
103 |
Q |
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| T |
233990 |
ggagcagcatgggtggatgtattaaataaaaggaaatgggtcctatataattttactaattaaaaggtgccggaagaatgaaacagcccaaagtgttact |
233891 |
T |
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| Q |
104 |
agagaaatatacacggttcatttagtgctttctattttactcttttccaccgtctaatgagagaccaaagttagttcattagcatcatttcatgcatgat |
203 |
Q |
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| T |
233890 |
agagaaatatacacggttcatttagtgctttctattttactcttttccaccgtctaatgagagaccaaagttagttcattagcatcatttcatgcatgat |
233791 |
T |
|
| Q |
204 |
tcatgaccaccatttagacacaaaagctgattaactcagattcactaatcatgcnnnnnnnncgcagcttagaattaaggaatcatttataaattaatgt |
303 |
Q |
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| T |
233790 |
tcatgaccaccatttagacacaaaagctgattaactcagattcactaatcatgcttttttttcgcagcttagaattaaggaatcatttataaattaatgt |
233691 |
T |
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| Q |
304 |
aattggactgagtcacacagccttcggtttagtggtcgacacaggtcacttaaacaagcctcttccaccattaattaagcttcaaactatagaatcaaat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233690 |
aattggactgagtcacacagccttcggtttagtggtcgacacaggtcacttaaacaagcctcttccaccattaattaagcttcaaactatagaatcaaat |
233591 |
T |
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| Q |
404 |
ctgaatattacagcagtcaaccaaccatgaatcttgatactacttttt |
451 |
Q |
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| T |
233590 |
ctgaatattacagcagtcaaccaaccatgaatcttgatactacttttt |
233543 |
T |
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