View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_low_26 (Length: 418)

Name: NF20539_low_26
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_low_26
NF20539_low_26
[»] chr2 (3 HSPs)
chr2 (8-400)||(18245513-18245905)
chr2 (8-368)||(18252649-18253009)
chr2 (8-368)||(18256559-18256919)
[»] chr6 (1 HSPs)
chr6 (298-374)||(30570605-30570681)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 18245905 - 18245513
Alignment:
Q  8 cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245905 cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag 18245806  T
Q  108 ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245805 ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg 18245706  T
Q  208 tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctacta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245705 tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctacta 18245606  T
Q  308 ctgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcattttgttgatagtgttaggttttgtgtgttttt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245605 ctgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcattttgttgatagtgttaggttttgtgtgttttt 18245513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 18253009 - 18252649
Alignment:
Q  8 cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag 107  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||  |||||| ||||||||| ||||     
T  18253009 cagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccaccaacggctatatctaaacgagcaat 18252910  T
Q  108 ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg 207  Q
    |||||||||||||||||||| ||| | |||||| ||||| | ||||| ||| ||||| |||||||||||||||| ||||||||| ||||| |||||||||    
T  18252909 ggaaattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccg 18252810  T
Q  208 tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctacta 307  Q
    |||||| ||||||||||  |||||||||||||||||| ||||||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||    
T  18252809 tggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctacta 18252710  T
Q  308 ctgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcat 368  Q
    | |||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||    
T  18252709 cggatgcatgagcaagggaaagaagagaaaaaatgaagaagatagttagaatcatcttcat 18252649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 368
Target Start/End: Original strand, 18256559 - 18256919
Alignment:
Q  8 cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag 107  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||| ||||     
T  18256559 cagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccacctacggctatatctaaacgtgcaat 18256658  T
Q  108 ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg 207  Q
    ||| |||||||||||||||| ||| | |||||| ||||| | ||||| ||| ||||| |||||||||||||||| ||||||||| ||||| |||||||||    
T  18256659 ggatattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccg 18256758  T
Q  208 tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctacta 307  Q
    |||||| ||||||||||  |||||||||||||||||| ||||||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||    
T  18256759 tggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctacta 18256858  T
Q  308 ctgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcat 368  Q
    | |||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||    
T  18256859 cggatgcatgagcaagggaaagaagagaaaaaatgaagaagatagttagaatcatcttcat 18256919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 374
Target Start/End: Complemental strand, 30570681 - 30570605
Alignment:
Q  298 aaatctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcattttgtt 374  Q
    ||||||||||||||||||||||| | ||||| ||||||||||| |||  ||||||| | ||||||||||||||||||    
T  30570681 aaatctactactgatgcatgagagaaggaaataagagaaaaaacgaataagatagcaagaatcatcttcattttgtt 30570605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University