View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_27 (Length: 416)
Name: NF20539_low_27
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 1351123 - 1350755
Alignment:
| Q |
15 |
agaagaaggtgagtgaaaatggaaaaagtgtggatttgagaaatagaaagtgaagagagttttggaatcggcaatgccaacaatgagattagatgatgat |
114 |
Q |
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| T |
1351123 |
agaagaaggtgagtgaaaatggaaaaagtgtggatttgagaaatagaaagtgaagagagttttggaatcggcaatgccaacaatgagattagatgatgat |
1351024 |
T |
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| Q |
115 |
tcaagccagcatgtgaaatcaatgcaaacttcgctcttgagtgattattactaattatgaattttcaaattttatcaataaaacttgacaaacttgagca |
214 |
Q |
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| T |
1351023 |
tcaagccagcatgtgaaatcaatgcaaacttcgctcttgagtgattattactaattatgaattttcaaattttatcaataaaacttgacaaacttgagca |
1350924 |
T |
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| Q |
215 |
tttttaacattaagaaaccaaacagtaatacaccaacttcacaagaccaactatgaacataaaatgagattatcaattgagtagatagcacaagcaatgt |
314 |
Q |
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| T |
1350923 |
tttttaacattaagaaaccaaacagtaatacaccaacttcacaagaccaactatgaacataaaatgagattatcaattgagtagatagcacaagcaatgt |
1350824 |
T |
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| Q |
315 |
cacagaactagaacttgtataattgttgagaagagttttgttcataaggttactcattacaatttctct |
383 |
Q |
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| T |
1350823 |
cacagaactagaacttgtataattgttgagaagagttttgttcataaggttactcattacaatttctct |
1350755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 1361540 - 1361399
Alignment:
| Q |
121 |
cagcatgtgaaatcaatgcaaacttcgctc-ttgagtgattattactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcattttt |
219 |
Q |
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| T |
1361540 |
cagcatgttaaatcaatgctaactttgctaattgagtgattattactaattataaattttcaaattttatctataaaacttgacaaacttgagcattttt |
1361441 |
T |
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| Q |
220 |
aacattaagaaaccaaacagtaatacaccaacttcacaagacc |
262 |
Q |
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| T |
1361440 |
aacattgagtaaccaaacagtaataca-cgacttcacaagacc |
1361399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 1354910 - 1354990
Alignment:
| Q |
161 |
attactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaa |
242 |
Q |
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| T |
1354910 |
attactaattatgaattttcaaattacatctaaaaaacttcacaaatttgagca-ttctaacattaagaaactaaatagtaa |
1354990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 37319496 - 37319540
Alignment:
| Q |
86 |
caatgccaacaatgagattagatgatgattcaagccagcatgtgaaa |
132 |
Q |
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| T |
37319496 |
caatgccaacaatgagattagatgat--tccaagccagcatgtgaaa |
37319540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 1361318 - 1361280
Alignment:
| Q |
333 |
ataattgttgagaagagttttgttcataaggttactcat |
371 |
Q |
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| T |
1361318 |
ataattgttgagaagagttttatccataaggttactcat |
1361280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 29051899 - 29051994
Alignment:
| Q |
163 |
tactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaatacaccaacttcacaa |
258 |
Q |
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| T |
29051899 |
tactaattatgaattttcaaattacatatagaaaacttcacaaatttgagcatttctaacattgagaaaccaaatagtaacacactgacttcacaa |
29051994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 13590735 - 13590652
Alignment:
| Q |
164 |
actaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaatacac |
247 |
Q |
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| T |
13590735 |
actaatcatgaattttcaaattacatctataaaactatacaaatttgagcatttttaccactgagaaaccaaatagtaacacac |
13590652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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