View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_low_31 (Length: 386)

Name: NF20539_low_31
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_low_31
NF20539_low_31
[»] chr1 (9 HSPs)
chr1 (18-369)||(1359953-1360291)
chr1 (18-87)||(238583-238652)
chr1 (18-89)||(28564851-28564923)
chr1 (18-87)||(15752065-15752135)
chr1 (18-89)||(2959782-2959854)
chr1 (18-53)||(7079133-7079168)
chr1 (18-87)||(10922763-10922833)
chr1 (18-87)||(32267070-32267140)
chr1 (18-89)||(9903124-9903196)
[»] chr8 (8 HSPs)
chr8 (18-89)||(36695047-36695119)
chr8 (18-87)||(1204966-1205036)
chr8 (18-89)||(12876146-12876218)
chr8 (18-87)||(1150186-1150256)
chr8 (18-87)||(9864187-9864257)
chr8 (18-87)||(10555283-10555353)
chr8 (18-87)||(37970600-37970670)
chr8 (18-65)||(1149713-1149761)
[»] chr2 (8 HSPs)
chr2 (18-87)||(33551079-33551149)
chr2 (18-89)||(26357615-26357687)
chr2 (18-87)||(43648338-43648408)
chr2 (19-87)||(17054190-17054259)
chr2 (18-53)||(39167456-39167491)
chr2 (18-87)||(11366474-11366544)
chr2 (18-87)||(17071830-17071900)
chr2 (18-89)||(19289416-19289488)
[»] chr7 (8 HSPs)
chr7 (18-89)||(30055540-30055612)
chr7 (18-89)||(7334807-7334879)
chr7 (18-87)||(29173555-29173625)
chr7 (18-87)||(37109887-37109957)
chr7 (18-87)||(38258560-38258630)
chr7 (18-87)||(43686056-43686125)
chr7 (20-87)||(17842664-17842732)
chr7 (18-65)||(18797364-18797412)
[»] chr4 (8 HSPs)
chr4 (18-89)||(17167751-17167823)
chr4 (18-89)||(17173328-17173400)
chr4 (18-89)||(19089554-19089626)
chr4 (17-87)||(879648-879719)
chr4 (23-89)||(4205154-4205221)
chr4 (18-87)||(30002725-30002795)
chr4 (18-87)||(37775709-37775779)
chr4 (18-89)||(37663842-37663912)
[»] chr5 (7 HSPs)
chr5 (18-87)||(36860463-36860533)
chr5 (17-87)||(27318551-27318622)
chr5 (18-87)||(22974147-22974217)
chr5 (18-87)||(24886144-24886214)
chr5 (18-87)||(36866802-36866872)
chr5 (18-89)||(699188-699260)
chr5 (18-89)||(14919593-14919665)
[»] chr3 (9 HSPs)
chr3 (18-87)||(4761724-4761794)
chr3 (18-87)||(48354972-48355042)
chr3 (17-87)||(35844357-35844428)
chr3 (17-87)||(47481553-47481624)
chr3 (18-87)||(24489037-24489107)
chr3 (18-87)||(34132966-34133036)
chr3 (18-87)||(51213056-51213126)
chr3 (18-85)||(3655277-3655345)
chr3 (18-89)||(37203096-37203168)
[»] scaffold0291 (1 HSPs)
scaffold0291 (18-89)||(7925-7997)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-87)||(174-244)
[»] chr6 (2 HSPs)
chr6 (18-87)||(1945874-1945944)
chr6 (18-87)||(8513273-8513343)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 1359953 - 1360291
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgttatcactacattttaaatattacagtgttaacttcatcnnnnnnnntcattatcataacttcatct 117  Q
    |||||||||||||||| |||||||| ||| || ||||||||| ||||| ||| ||| ||| |||||||||||        ||||||||||| ||||||||    
T  1359953 aacttttgatgtcattatacaaacactgaaatattatcactatatttttaatgttatagtattaacttcatctgaaaaa-tcattatcataccttcatct 1360051  T
Q  118 ttgttaaagtgatgatacttcaccataaaattttgcgtataacttatgaacacatcttacttgaatttatttccactaaaagagattcgaccaaaaatgt 217  Q
    |  || |||||||||||            ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1360052 tacttgaagtgatgata------------attttccgtatagcttatgaacacatcttacttgaatttatttccactaaaagagattcgaccaaaaatgt 1360139  T
Q  218 tnnnnnnntcaaagagtaaaagttattttgactcaaactcaatcaaacaacacacattttctctctcttacccagtcacctaatttagcatcttgactcc 317  Q
    |       |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1360140 taaaaaaatcaaagagtagaagttattttgactcaaactcaatcaaacaacacgcattttctctctcttacccagtcacctaatttagcatcttgactcc 1360239  T
Q  318 tttatatatctccacatccctcaacctttcaccccttccaaacccatttcct 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1360240 tttatatatctccacatccctcaacctttcaccccttccaaacccatttcct 1360291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 238583 - 238652
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| || |||||||||||||    
T  238583 aacttttgatgtcattgtacaaacagtg-gatgttactcacaacatttttaatactatagtgttaacttca 238652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 28564851 - 28564923
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    ||||||||||||||||||||||||||| || ||||| ||| ||||||||  || ||| |||||||||||||||    
T  28564851 aacttttgatgtcattgtacaaacagtaaggtgttactcattacatttttgatgttatagtgttaacttcatc 28564923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 15752135 - 15752065
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||| |||||||||||||||||| ||||| |||||| |||||  || ||| |||||||||||||    
T  15752135 aacttttgatgccattgtacaaacagtgaggtgttactcactatattttttatgttatagtgttaacttca 15752065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 2959854 - 2959782
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||| ||||||||||||| ||||||| | |||||| |||  || ||| |||||||||||||||    
T  2959854 aacttttgatgtcactgtacaaacagtgggatgttacttactacagttttgatgttatagtgttaacttcatc 2959782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 7079133 - 7079168
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  7079133 aacttttgatgtcattgtacaaacagtgaggtgtta 7079168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 10922833 - 10922763
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||| | | ||| ||| ||||||||  || ||| |||||||||||||    
T  10922833 aacttttgatgtcattgtacaaacagtggggtcttactcattacattttttatgttatagtgttaacttca 10922763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 32267140 - 32267070
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||| | ||||| ||| ||||||||  || ||| | |||||||||||    
T  32267140 aacttttgatgtcattgtacaaacagtggggtgttactcattacatttttgatgttatattgttaacttca 32267070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 9903124 - 9903196
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||| ||||||||||| | | ||||| |||||||| |||  || ||| |||||||||||||||    
T  9903124 aacttttgatgtcactgtacaaacagcggggtgttactcactacagttttgatgttatagtgttaacttcatc 9903196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 36695047 - 36695119
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||||||||||||||| | ||||| |||| |||||||  |||||| |||||||||||||||    
T  36695047 aacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatattatagtgttaacttcatc 36695119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 1205036 - 1204966
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||  || ||| |||||||||||||    
T  1205036 aacttttgatgtcattgtacaaacagtgatgtgttactcactacattttttatgttatagtgttaacttca 1204966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 12876218 - 12876146
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||||||||||||||  | ||||| |||| |||||||  |||||| |||||||||||||||    
T  12876218 aacttttgatgtcattgtacaaacagttgggtgttactcacaacattttttatattatagtgttaacttcatc 12876146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 1150186 - 1150256
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||||| |||||||||||||| ||||||| ||| ||||||||  || ||| || ||||||||||    
T  1150186 aacttttgatgtcgttgtacaaacagtgggatgttactcattacatttttgatgttatagcgttaacttca 1150256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 9864257 - 9864187
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||| | ||||| |||| |||||||  ||| || |||||||| ||||    
T  9864257 aacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatactatagtgttaatttca 9864187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 10555283 - 10555353
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||||||||||||||||||||   ||||| ||| ||||||||  || ||| |||||||||||||    
T  10555283 aacttttgatgtcattgtacaaacagtggagtgttactcattacattttttatgttatagtgttaacttca 10555353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 37970600 - 37970670
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||| |||||||||||||||| | ||||| ||| ||||||||  || ||| |||||||||||||    
T  37970600 aacttttgatggcattgtacaaacagtggggtgttactcattacatttttgatgttatagtgttaacttca 37970670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 1149713 - 1149761
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacatttt 65  Q
    |||||||||||||||||||||||||||| | ||||| ||| ||||||||    
T  1149713 aacttttgatgtcattgtacaaacagtgggttgttactcattacatttt 1149761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 33551079 - 33551149
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||  || ||| |||||||||||||    
T  33551079 aacttttgatgtcattgtacaaacagtggggtgttactcactacatttttgatgttatagtgttaacttca 33551149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 26357687 - 26357615
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||| |||  || ||| |||||||||||||||    
T  26357687 aacttttgatgtcactgtacaaacagtgggatgttactcactacagttttgatgttatagtgttaacttcatc 26357615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 43648338 - 43648408
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||| ||||||||||||| ||||| ||| ||||||||  || ||| |||||||||||||    
T  43648338 aacttttgatgtcattatacaaacagtgaggtgttactcattacatttttgatgttatagtgttaacttca 43648408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 17054190 - 17054259
Alignment:
Q  19 acttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||  || ||| ||| |||||||||    
T  17054190 acttttgatgtcattgtacaaacaatgagatgttacttactacatttttgatgttatagtattaacttca 17054259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 39167456 - 39167491
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta 53  Q
    |||||||||||||||||||||||||||||| |||||    
T  39167456 aacttttgatgtcattgtacaaacagtgaggtgtta 39167491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 11366474 - 11366544
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||| |||||| |||||||||||| ||| ||||||||  || ||| |||||||| ||||    
T  11366474 aacttttgatgtcattatacaaatagtgagatgttactcattacatttttgatgttatagtgttaatttca 11366544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 17071830 - 17071900
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||||||||||||||| | |||||||||| | ||||||||||   | ||| |||||||||||||    
T  17071830 aacttttgatgtcattgtacaaataatgagatgttacttactacatttttgttgttatagtgttaacttca 17071900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 19289416 - 19289488
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    ||||||||||||||||||||||||| || | ||||| ||| || |||||  || ||| |||||||||||||||    
T  19289416 aacttttgatgtcattgtacaaacaatggggtgttactcattatatttttgatgttatagtgttaacttcatc 19289488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 30055612 - 30055540
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||||||||||||||| | ||||| ||| |||| |||  |||||| |||||||||||||||    
T  30055612 aacttttgatgtcattgtacaaacagtggggtgttactcattacaattttgatattatagtgttaacttcatc 30055540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 7334879 - 7334807
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||||||||||||||| | ||||| ||| ||||| ||  || ||| |||||||||||||||    
T  7334879 aacttttgatgtcattgtacaaacagtggggtgttactcattacatattttatgttatagtgttaacttcatc 7334807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 29173625 - 29173555
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||||||||||||||||||||   ||||| |||| ||| |||  ||| ||||||||||||||||    
T  29173625 aacttttgatgtcattgtacaaacagtggagtgttactcacaacacttttgatactacagtgttaacttca 29173555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 37109957 - 37109887
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||| ||| | ||||| ||| ||||||||  || ||| |||||||||||||    
T  37109957 aacttttgatgtcattgtacaaacggtggggtgttactcattacattttttatgttatagtgttaacttca 37109887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 38258630 - 38258560
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||| ||| | ||||| ||| ||||||||  || ||| |||||||||||||    
T  38258630 aacttttgatgtcattgtacaaacggtgtggtgttactcattacattttttatgttatagtgttaacttca 38258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 43686125 - 43686056
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||| |||||||||||||||| | ||||| |||| |||||||  |||||| |||||||||||||    
T  43686125 aacttttgatgccattgtacaaacagtg-ggtgttactcacaacatttttgatattatagtgttaacttca 43686056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 17842664 - 17842732
Alignment:
Q  20 cttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||| ||| | ||||| ||| ||||||||  || ||| |||||||||||||    
T  17842664 cttttgatgtcattgtacaaacggtggggtgttactcattacattttttatgttatagtgttaacttca 17842732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 18797412 - 18797364
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacatttt 65  Q
    |||||||||||||||||||||||||||| | ||||| ||| ||||||||    
T  18797412 aacttttgatgtcattgtacaaacagtggggtgttactcattacatttt 18797364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 17167823 - 17167751
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||||||||||||||| | ||||| |||| |||||||  |||||| | |||||||||||||    
T  17167823 aacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatattataatgttaacttcatc 17167751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 17173400 - 17173328
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||||||||||||||| | ||||| |||| |||||||  |||||| | |||||||||||||    
T  17173400 aacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatattataatgttaacttcatc 17173328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 19089554 - 19089626
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||| ||||||||||| | ||||| ||| |||| |||  |||||| |||||||||||||||    
T  19089554 aacttttgatgtcattatacaaacagtggggtgttactcattacaattttgatattatagtgttaacttcatc 19089626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 879648 - 879719
Alignment:
Q  17 aaacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||| |||| ||||| ||| ||||||||  || ||| |||||| ||||||    
T  879648 aaacttttgatgtcattgtacaaacaatgaggtgttactcattacatttttgatgttatagtgtttacttca 879719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 4205221 - 4205154
Alignment:
Q  23 ttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    ||||||||||||||||||||||| | ||||| |||  |||||||  |||||| |||||||||||||||    
T  4205221 ttgatgtcattgtacaaacagtggggtgttattcagaacatttttgatattatagtgttaacttcatc 4205154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 30002725 - 30002795
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||| ||||||||||||||| ||||| |||| ||| |||  ||  ||||||||||||||||    
T  30002725 aacttttgatgtcactgtacaaacagtgaggtgttactcacaacacttttgatgctacagtgttaacttca 30002795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 37775779 - 37775709
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||| || ||||||||||||| | ||||| |||| ||||||| ||||||| |||| ||||||||    
T  37775779 aacttttgatgccactgtacaaacagtggggtgttactcacaacatttttaatattatagtgctaacttca 37775709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 37663842 - 37663912
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||||||||||||||| | ||||| ||| |||| ||| ||| ||  |||||||||||||||    
T  37663842 aacttttgatgtcattgtacaaacagtggggtgttactcattacagttttaatgtt--agtgttaacttcatc 37663912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 36860533 - 36860463
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||| | ||||| |||| |||||||  ||| || |||||||||||||    
T  36860533 aacttttgatgtcattgtacaaacagtggggtgttactcacaacattttttatactatagtgttaacttca 36860463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 27318551 - 27318622
Alignment:
Q  17 aaacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||||   ||||| ||||||||||||  || ||  |||||||||||||    
T  27318551 aaacttttgatgtcattgtacaaacagtggtgtgttactcactacattttttatgttttagtgttaacttca 27318622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 22974147 - 22974217
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||| ||||||||||||||| ||||||| ||| ||| ||||  || ||| |||||||||||||    
T  22974147 aacttttgatgttattgtacaaacagtgggatgttactcattacttttttgatgttatagtgttaacttca 22974217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 24886214 - 24886144
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||| | ||||| ||| ||||||||  || ||| ||| |||||||||    
T  24886214 aacttttgatgtcattgtacaaacagtggggtgttactcattacatttttgatgttatagtattaacttca 24886144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 36866872 - 36866802
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||| |||||||||||||||| | ||||| |||| | |||||  |||||| |||||||||||||    
T  36866872 aacttttgatgccattgtacaaacagtggggtgttactcacaatatttttgatattatagtgttaacttca 36866802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 699260 - 699188
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||| ||||||||||||| | ||||| |||||| |||||  ||  || |||||||||||||||    
T  699260 aacttttgatgtcactgtacaaacagtggggtgttactcactagattttttatgctatagtgttaacttcatc 699188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 14919593 - 14919665
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||| || |||||||||| ||||| ||| ||||||||  || ||| | |||||||||||||    
T  14919593 aacttttgatgtcattatataaacagtgaggtgttactcattacatttttgatgttataatgttaacttcatc 14919665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 4761724 - 4761794
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||||  ||||| ||| ||||||||  |||||| ||| |||||||||    
T  4761724 aacttttgatgtcattgtacaaacagtgaagtgttactcattacatttttgatattatagtattaacttca 4761794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 48355042 - 48354972
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||| ||||||||||||| || | ||||| ||| |||||||| ||||||| |||||||||||||    
T  48355042 aacttttgatgccattgtacaaacaatggggtgttactcattacatttttaatattatagtgttaacttca 48354972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 35844428 - 35844357
Alignment:
Q  17 aaacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||||||| ||||||||||||||| ||||| |||| |||||||   | ||| |||||||||||||    
T  35844428 aaacttttgatgtcactgtacaaacagtgaggtgttactcacaacatttttgttgttatagtgttaacttca 35844357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 47481624 - 47481553
Alignment:
Q  17 aaacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||||||||| ||||||||||| | ||||| ||| ||||||||  || ||| |||||||||||||    
T  47481624 aaacttttgatgtcattctacaaacagtggggtgttactcattacatttttgatgttatagtgttaacttca 47481553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 24489037 - 24489107
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||| |||||||||  |||||| |||| ||||||| |||| || ||| |||||||||    
T  24489037 aacttttgatgtcattgtgcaaacagtggaatgttactcacaacatttttaatactatagtcttaacttca 24489107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 34133036 - 34132966
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||||||||||||||| | ||||| |||| |||||||  ||| || |||||||| ||||    
T  34133036 aacttttgatgtcattgtacaaacagtggggtgttactcacaacatttttgatactatagtgttaatttca 34132966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 51213056 - 51213126
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtt-atcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||| |||||||||||||||| | ||||  ||| ||||||||  || |||||||||||||||||    
T  51213056 aacttttgatgccattgtacaaacagtggggtgttgctcattacattttttatgttacagtgttaacttca 51213126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 3655277 - 3655345
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaactt 85  Q
    |||||||||||||||||||||||| ||| | ||||| ||| ||||||||  || ||| |||||||||||    
T  3655277 aacttttgatgtcattgtacaaacggtggggtgttactcattacattttttatgttatagtgttaactt 3655345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 37203168 - 37203096
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    ||||||||||| || ||||||||||||| | ||||| |||||||| |||  || ||| |||||||||||||||    
T  37203168 aacttttgatgccactgtacaaacagtggggtgttactcactacaattttgatgttatagtgttaacttcatc 37203096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 7997 - 7925
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttcatc 89  Q
    |||||||||||||||||||||||||||| | ||||| ||| |||| |||  || ||| |||||||||||||||    
T  7997 aacttttgatgtcattgtacaaacagtggggtgttactcattacaattttgatgttatagtgttaacttcatc 7925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 244 - 174
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    ||||||||||| ||||||||||||||||   ||||| |||| |||||||  ||| ||||||||||||||||    
T  244 aacttttgatgccattgtacaaacagtggagtgttactcacaacattttttatactacagtgttaacttca 174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 1945944 - 1945874
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||||| ||||||||||| | ||||| ||| ||||||||  || ||| |||||||||||||    
T  1945944 aacttttgatgtcattctacaaacagtggggtgttactcattacatttttgatgttatagtgttaacttca 1945874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 8513343 - 8513273
Alignment:
Q  18 aacttttgatgtcattgtacaaacagtgagatgtta-tcactacattttaaatattacagtgttaacttca 87  Q
    |||||||||||||| ||||||||||||| | ||||| |||| ||| |||  |||||| |||||||||||||    
T  8513343 aacttttgatgtcactgtacaaacagtggggtgttactcacaacacttttgatattatagtgttaacttca 8513273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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