View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_32 (Length: 377)
Name: NF20539_low_32
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 43034663 - 43035018
Alignment:
| Q |
1 |
gaagagagtagcatcaggcatgcaagtcacgtgccgtacccccacttgtacaacaggtttacttacttttccttcaccactcacagttgaacccatcaca |
100 |
Q |
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| T |
43034663 |
gaagagagcagcatcaggcatgcaagtcacgtgccgtacccccacttgtacaacaggtttacttacttttccttcaccactcacagttgaacccatcaca |
43034762 |
T |
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| Q |
101 |
aacccttcacccggtaaccactttgaacccaatattgcagaatcaatgcagaatttaccaccttttttcacactcactgtgccttcagcaattggttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43034763 |
aacccttcacccggtaaccactttgaacccaatattgcagaatcaatgcagaatttaccaccttttttcacactcactgtgccttcagcaattggtattg |
43034862 |
T |
|
| Q |
201 |
cattaacaggtccattgtcagagaaaagctctatcttgtagcccaagccatcgataggacctctctctcaccatgcctcgagacgaccccatgatttcca |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
43034863 |
cattaacaggtccattgtcagagaaaagctctaccttgtagcccaagccatcgataggacctctctctcgccatgcctcgagatgaccccatgatttcca |
43034962 |
T |
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| Q |
301 |
gctacagctactcacagtggagcctccaattgagcggagaataacccacgcgcctg |
356 |
Q |
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||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |
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| T |
43034963 |
gctacagctactcacagtggagcctccgatcgcgcggagaataacccacgcgcctg |
43035018 |
T |
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