View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_34 (Length: 360)
Name: NF20539_low_34
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 80 - 342
Target Start/End: Complemental strand, 22025999 - 22025737
Alignment:
| Q |
80 |
gtggcaagattcaatcgacttaaggatccnnnnnnnatcacttataatcgcacaacaacaatctataaagtagtgttcgttctttgcaccttaacacagt |
179 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22025999 |
gtggcaagattcaatcaacttaaggatcatttttttatcacttataatcgcacaacaacaatctataaagtagtgttcgttctttgcaccttaacacagt |
22025900 |
T |
|
| Q |
180 |
tcaaatcccccattttcaattttagttagtttgatagtttctcaatataaactatcctaagtgcgagcttccaatgaggggcacgctcaacaattatctc |
279 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22025899 |
tcaaatcccccattttcaatgttagttagtttgatagtttctcaaaataaactatcgaaagtgcgtgcttccaatgaggggcacgctcaacaattatctt |
22025800 |
T |
|
| Q |
280 |
tttagataacttcttaggggtgtttgtctcaaggattataaatttattcctgagattggaaat |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
22025799 |
tttagataacttcttaggggtgtttgtctcaaggattataaatttattcttgacattggaaat |
22025737 |
T |
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