View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_36 (Length: 358)
Name: NF20539_low_36
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 2225388 - 2225050
Alignment:
| Q |
1 |
cagtaaccaaacaacctcaaaaaacccgaaatgggttttcttagaaaagcatcaaaaaccttaaaacaatcaaattacgtttcattgttcttcaatttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| |
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| T |
2225388 |
cagtaaccaaacaacctcaaaaaacccgaaatgggttttcttagaaaagcatcaaaaaccttaaaacaatcaaactatgtttcattgttattcaatttca |
2225289 |
T |
|
| Q |
101 |
accctttatcaaacagaataacccatgaaagattttccattacacgtgcacttttctgtacacagtcacgccaaaactacaccaaagaaaaagccattat |
200 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2225288 |
accctttatcaagtagaataacccatgaacgattttccattacacgtgcacttttctgtacacagtcacgccaaaactacaccaaagaaaaagccattat |
2225189 |
T |
|
| Q |
201 |
agatttgagtcagtacccaccagagcttgtgagaaatttttcaatcattgcacatgttgatcatggaaaatctactcttgctgatcggttattggagctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2225188 |
agatttgagtcagtacccaccagagcttgtgagaaatttttcaatcattgcacatgttgatcatggaaaatctactcttgctgatcggttattggagctt |
2225089 |
T |
|
| Q |
301 |
actggtactattaagaaaggacttgggcaacctcagtat |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
2225088 |
actggtactattaagaaaggacttgggcaacctcagtat |
2225050 |
T |
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