View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_37 (Length: 355)
Name: NF20539_low_37
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 13609829 - 13610151
Alignment:
| Q |
18 |
gagacatacgtgaagaaagttttagattttcgtggatttcatcccgaaattggcttaagagttctctttgataaatcattaataacctatgggaggtttt |
117 |
Q |
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| T |
13609829 |
gagacatacgtgaagaaagttttagattttcgtggatttcatcccgaaattggcttaagagttctctttgataaatcattaataacctatgggaggtttt |
13609928 |
T |
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| Q |
118 |
ctacgatttctatgcatcgtttgttaaaagaacttggcaggagtatcattaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggacca |
217 |
Q |
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| T |
13609929 |
ctacgatttctatgcatcgtttgttaaaagaacttggcaggagtatcattaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggacca |
13610028 |
T |
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| Q |
218 |
caaggatgtccacaatgttatctcggaaaaaatggtaaaataattatcgaaattaaattattgctcgccatttttcattatcaattaataaactttgaac |
317 |
Q |
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| T |
13610029 |
caaggatgtccacaatgttatctcggaaaaaatggtaaaataattatcgaaattaaattattgctcgccatttttcattatcaattaat-aactttgaac |
13610127 |
T |
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| Q |
318 |
tatgtagtgttatcaatgttattt |
341 |
Q |
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| T |
13610128 |
tatgtagtgttatcaatgttattt |
13610151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 31245778 - 31246065
Alignment:
| Q |
18 |
gagacatacgtgaagaaagttttagattttcgtggatttcatcccgaaattggcttaagagttctctttgataaatcattaataacctatggga--ggtt |
115 |
Q |
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| T |
31245778 |
gagacatacgtgaataaagttttagattttcgtggatttcatcctgaaattggtttaagagttcttgttgataagtcattcataacctgtgagaacggg- |
31245876 |
T |
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| Q |
116 |
ttctacgatttctatgcatcgtttgttaaaagaacttggcaggagtatcattaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggac |
215 |
Q |
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| |||| ||||||| |||||| |||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31245877 |
----agaatttttatgcatgatttgttcaaagaactaggcaagagtatcgttagggaaaaatcacccaaagaaccaagaaagtggaacaggatgtgggac |
31245972 |
T |
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| Q |
216 |
cacaaggatgtccacaatgttatctcggaaaaaatggtaaaataattatcgaaattaaattattgctcgccatttttcattatcaattaataa |
308 |
Q |
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| T |
31245973 |
tacaaggatgtccacaatgttatatcagaaaacatggtaaaatagttattaaaataagattattgcttaccatttttctatatcgattaataa |
31246065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 31477688 - 31477747
Alignment:
| Q |
36 |
gttttagattttcgtggatttcatcccgaaattggcttaagagttctctttgataaatca |
95 |
Q |
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| T |
31477688 |
gttttaaattgttgtggatttcatgccgatattggattaagagttctcattgataaatca |
31477747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 256
Target Start/End: Complemental strand, 6472597 - 6472464
Alignment:
| Q |
123 |
atttctatgcatcgtttgttaaaagaacttggcaggagtatcattaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggaccacaagg |
222 |
Q |
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| T |
6472597 |
atttgtatgcatgatttgttcaaagaacttgggaagagcatcgttagagaaaaatcaatgaaagaaccaagaaagtggaactggttgtgggactacaaag |
6472498 |
T |
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| Q |
223 |
atgtccacaatgttatctcggaaaaaatggtaaa |
256 |
Q |
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|||| |||||||||||||| ||||| |||||||| |
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| T |
6472497 |
atgttcacaatgttatctcagaaaacatggtaaa |
6472464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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