View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_39 (Length: 352)
Name: NF20539_low_39
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 32679357 - 32679581
Alignment:
| Q |
3 |
ataatactacaatgacaacaaccaaagacagagcaggaaaaactgcaaaaattgaatccttggtaaaaatatttcagatttaggaatgattaactgcgtc |
102 |
Q |
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| T |
32679357 |
ataatactacaatgacaacaaccaaagacagagcaggaaaaactgcaaaaattgaatccttggtaaaaatatttcagatttaggaatgattaactgcgtc |
32679456 |
T |
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| Q |
103 |
aacaagtggtttactagttaagcacgtgcaaaataattagagttcacacttatattctcaaaaatttaatcattgacaactgaaaatagataaattctcc |
202 |
Q |
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| T |
32679457 |
aacaagtggtttaccagttaagcacgtgcaaaataattagagttcacacttatattctcaaaaatttaatcattgacaactgaaaatagataaattctcc |
32679556 |
T |
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| Q |
203 |
aaacactgcattccaagtttgcaac |
227 |
Q |
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||| ||||||||||||||||||||| |
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| T |
32679557 |
aaagactgcattccaagtttgcaac |
32679581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 54225260 - 54225211
Alignment:
| Q |
6 |
atactacaatgacaacaaccaaagac--agagcaggaaaaactgcaaaaa |
53 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
54225260 |
atactacaatgacaacaaccaaagacaaagagtaggaaaaactgcaaaaa |
54225211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 54225004 - 54224948
Alignment:
| Q |
278 |
tgatctcactcctcttcacaacaagagtgtcaataatcaactcattgatgggggaac |
334 |
Q |
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|||||||| || ||||||||||||||||||||| | ||||||||| |||||||||| |
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| T |
54225004 |
tgatctcattcaccttcacaacaagagtgtcaatcaccaactcattaatgggggaac |
54224948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 54225093 - 54225056
Alignment:
| Q |
190 |
agataaattctccaaacactgcattccaagtttgcaac |
227 |
Q |
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|||||||||||||||| | ||||||||||||||||||| |
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| T |
54225093 |
agataaattctccaaagattgcattccaagtttgcaac |
54225056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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