View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_low_41 (Length: 346)
Name: NF20539_low_41
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 17644696 - 17645011
Alignment:
| Q |
14 |
gaattcaagagtttaattaagaacattacaggaaatgaatcaaatgcatcaaggcaaccggttccggttcagttttcgcctccagtaccaagacatcatg |
113 |
Q |
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| T |
17644696 |
gaattcaagagtttaattaagaacattacaggaaatgaatcaaatgcatcaaggcaaccagttccggttcagttttcgcctccagtaccaagacatcatg |
17644795 |
T |
|
| Q |
114 |
tgcatcctatttatggtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaagactcaacgcc |
213 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17644796 |
tgcatcctatttctggtcctctccttgttaacaattcacaaagtaatctttctgggtttccagtatctacttccatgagaaactttcaagactcaacgcc |
17644895 |
T |
|
| Q |
214 |
gctgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaatacaaatgttcaaaatcatccaatatttcaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17644896 |
gctgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaatcacaagccttgaacaatacaaatgttcaaaatcatccaatatttcaa |
17644995 |
T |
|
| Q |
314 |
tctcaagaacattatt |
329 |
Q |
| |
|
|||||| ||||||||| |
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| T |
17644996 |
tctcaaaaacattatt |
17645011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 136 - 329
Target Start/End: Original strand, 17604737 - 17604930
Alignment:
| Q |
136 |
tcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaagactcaacgccgctgaacattggtaattcaaga |
235 |
Q |
| |
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||||||| | ||||||||||||||| || || ||||||| || || ||| |||||||||| ||||||| | ||||||||||||||||||||| || |
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| T |
17604737 |
tcttgttgaaaattcacaaagtaatattgttgagtttccaatatcttctttgatgagaaactctcaagacctatttccgctgaacattggtaattcagga |
17604836 |
T |
|
| Q |
236 |
ggtaaccagttccaaccttaccctcctcaattacaagccttgaacaatacaaatgttcaaaatcatccaatatttcaatctcaagaacattatt |
329 |
Q |
| |
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||||| ||||| || |||||||||| ||||| ||||| ||| ||||||| |||| ||||| ||||||||||| || |||||||||||||||||| |
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| T |
17604837 |
ggtaatcagtttcagccttaccctcatcaatcacaagtcttcaacaatataaattttcaatatcatccaataattaaatctcaagaacattatt |
17604930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 329
Target Start/End: Original strand, 17631290 - 17631513
Alignment:
| Q |
106 |
acatcatgtgcatcctatttatggtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaagac |
205 |
Q |
| |
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||||| |||||| |||||| |||| || ||||||| ||||| ||| ||||||||| || ||||||| || || |||| |||||||||| ||||||| |
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| T |
17631290 |
acatcctgtgcagcctattactggtaatcctcttgttgacaatccacggagtaatcttgttgagtttccaatatctgcttcgatgagaaactctcaagac |
17631389 |
T |
|
| Q |
206 |
tcaacgccgctgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaatacaaatgttcaaaatcatccaa |
305 |
Q |
| |
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| | |||||| ||||||||||||||| ||||||| ||||| ||| |||||||| ||||| ||||| ||| ||||||| |||||||||| || |||||| |
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| T |
17631390 |
ttattgccgctaaacattggtaattcaggaggtaatcagtttcaatcttaccctaatcaatcacaagtcttcaacaatataaatgttcaatataatccaa |
17631489 |
T |
|
| Q |
306 |
tatttcaatctcaagaacattatt |
329 |
Q |
| |
|
|| || ||||||||||||||||| |
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| T |
17631490 |
taattacatctcaagaacattatt |
17631513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 134 - 329
Target Start/End: Complemental strand, 16481465 - 16481270
Alignment:
| Q |
134 |
cttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaagactcaacgccgctgaacattggtaattcaa |
233 |
Q |
| |
|
||||||||| ||||||| || ||||||||| | ||||||| || || |||| |||||||||| ||||||| | || |||||||||||||||| |
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| T |
16481465 |
cttcttgttgacaattcgcatagtaatcttgttaagtttccaatatcttcttcgatgagaaactctcaagacatactcccatcgaacattggtaattcag |
16481366 |
T |
|
| Q |
234 |
gaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaatacaaatgttcaaaatcatccaatatttcaatctcaagaacattatt |
329 |
Q |
| |
|
||||||| ||||| |||||||| |||| ||||| ||||| ||| ||||| | |||||||||| |||| |||||| || |||| || |||||||||| |
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| T |
16481365 |
gaggtaatcagtttcaaccttatcctcatcaatcacaagtcttcaacaacataaatgttcaatatcagccaataattaaatcccatgaacattatt |
16481270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 105 - 326
Target Start/End: Original strand, 17645336 - 17645554
Alignment:
| Q |
105 |
gacatcatgtgcatcctatttatggtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaaga |
204 |
Q |
| |
|
||||||||||||| |||||| | ||||| ||||||| |||||||||| | ||||||| || || |||||| || ||| |||||||||||||||||| |
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|
| T |
17645336 |
gacatcatgtgcaacctattactcgtccttctcttgtttacaattcacagaataatcttgttgagtctccagtttcttctttcatgagaaactttcaaga |
17645435 |
T |
|
| Q |
205 |
ctcaacgccgctgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaatacaaatgttcaaaatcatcca |
304 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||||||| |||| | ||||||||| | ||| || ||||||| |||||||||| |||| ||| |
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| T |
17645436 |
tccaacat---tgaacttgggtaattcaagaggtaaccagtttcaactatggcctcctcaaccaaaagtattcaacaatataaatgttcaacatcagcca |
17645532 |
T |
|
| Q |
305 |
atatttcaatctcaagaacatt |
326 |
Q |
| |
|
||| |||||||||| ||||||| |
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| T |
17645533 |
ataattcaatctcaggaacatt |
17645554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 29883364 - 29883431
Alignment:
| Q |
216 |
tgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaat |
283 |
Q |
| |
|
||||| ||| || |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||| |
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|
| T |
29883364 |
tgaactttgatagttcaagaggtaaccagtttcaaccttaccctactcaatcacaagtattgaacaat |
29883431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 29880417 - 29880324
Alignment:
| Q |
187 |
catgagaaactttcaagactcaacgccgctgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaat |
283 |
Q |
| |
|
||||||||| |||||| |||||||| ||||| ||| |||||||||||||||||| || || ||||||||||||||| ||||| ||||||||| |
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|
| T |
29880417 |
catgagaaattttcaaaactcaacga---tgaactttgataattcaagaggtaaccaatttcagtcttaccctcctcaatcacaagtattgaacaat |
29880324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 17631168 - 17631251
Alignment:
| Q |
14 |
gaattcaagagtttaattaagaacattacaggaaatgaatcaaatgcatcaaggcaaccggttccggttcagttttcgcctcca |
97 |
Q |
| |
|
|||||||||||||| || || ||||||| |||||| |||||||||||| ||||| ||| | ||| |||||| ||||| ||||| |
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|
| T |
17631168 |
gaattcaagagttttgttcagcacattacgggaaataaatcaaatgcattaaggccaccagatccagttcaggtttcggctcca |
17631251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 20751500 - 20751397
Alignment:
| Q |
226 |
taattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaatacaaatgttcaaaatcatccaatatttcaatctcaagaacat |
325 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||| |||| |||| || ||||||| |||||||||| |||| |||||| |||||||||||| || |
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|
| T |
20751500 |
taattcagaaggtaaccattttcaaccttaccctcatcaaccacaattattcaacaatataaatgttcaatatcagccaataacccaatctcaagaatat |
20751401 |
T |
|
| Q |
326 |
tatt |
329 |
Q |
| |
|
|||| |
|
|
| T |
20751400 |
tatt |
20751397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 329
Target Start/End: Complemental strand, 17950221 - 17950024
Alignment:
| Q |
129 |
gtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaagactcaacgccgctgaacattggtaa |
228 |
Q |
| |
|
|||||| ||| |||||||||||||| | ||||||| | || |||| | || ||| |||||||||||||||||| |||| ||||| ||||||| |
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|
| T |
17950221 |
gtcctcctctagttaacaattcacagaataatcttgacgagtctccaatttctgctttcatgagaaactttcaagagtcaaata---tgaactttggtaa |
17950125 |
T |
|
| Q |
229 |
ttcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaatacaaatgttcaaaatcatccaatatttcaatctcaagaacattat |
328 |
Q |
| |
|
|||| |||||||| || ||||||||||||| |||| |||| || ||||||| |||||| ||| || |||||||| |||||||||||| ||||| |
|
|
| T |
17950124 |
ttcataaggtaacccttttcaaccttaccctcatcaaccacaattattcaacaatataaatgtccaatataatccaataacccaatctcaagaatattat |
17950025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 329
Target Start/End: Complemental strand, 17954073 - 17953876
Alignment:
| Q |
129 |
gtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaagactcaacgccgctgaacattggtaa |
228 |
Q |
| |
|
|||||| ||| |||||||||||||| | ||||||| | || |||| | || ||| |||||||||||||||||| |||| ||||| ||||||| |
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|
| T |
17954073 |
gtcctcctctagttaacaattcacagaataatcttgacgagtctccaatttctgctttcatgagaaactttcaagagtcaaata---tgaactttggtaa |
17953977 |
T |
|
| Q |
229 |
ttcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaatacaaatgttcaaaatcatccaatatttcaatctcaagaacattat |
328 |
Q |
| |
|
|||| |||||||| || ||||||||||||| |||| |||| || ||||||| |||||| ||| || |||||||| |||||||||||| ||||| |
|
|
| T |
17953976 |
ttcataaggtaacccttttcaaccttaccctcatcaaccacaattattcaacaatataaatgtccaatataatccaataacccaatctcaagaatattat |
17953877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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