View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_low_42 (Length: 343)
Name: NF20539_low_42
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 42766943 - 42766640
Alignment:
| Q |
19 |
aagtattaacggttagccataaggataagacggtggcggaaatattttccttaggttggagggatggaggtgaagcttggggtggcggcgtcggttgtta |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42766943 |
aagtattaacggttagccacaaggataagacggtggcggaaatattttccttaggttggagggatggaggtgaagcttggggtggcggcgtcggttgtta |
42766844 |
T |
|
| Q |
119 |
gtttgagaggaggatctagtgggggattgtatgtctttactttctaatgttgctttacaggataccatcacagatgtctggtagtggcgcccaaatgtgg |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
42766843 |
gtttgggaggaggatctagtgggggattgtatgtctttactttctaatgttgctt---------ctatcacagatgtttggcagtggcgcccaaatgtgg |
42766753 |
T |
|
| Q |
219 |
ctgatggttatacggtgtgcgatgtgtatcaaatgcaggagatgcatagtcgcgatgaagttgttgatgcagtttgacataaatatgttcatttgaaggt |
318 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42766752 |
ctgatggttat--ggtctgcgatgtgtatcaaatgcaggagatgcatagtcgcgatgaagttgttgatgcagtttgacataaatatgttcatctgaaggt |
42766655 |
T |
|
| Q |
319 |
ttcaatttgtctgtg |
333 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
42766654 |
ttcaatttgtgtgtg |
42766640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 64 - 328
Target Start/End: Original strand, 33988851 - 33989132
Alignment:
| Q |
64 |
tttccttaggttggagggatggaggtgaagcttggggtggcggcgtcggttgttagtttgagaggaggatctagtgggggattgtatgtctttactttct |
163 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||||||||| ||||||||||| | || |||||||||||||||||||| |||| | ||| ||||| |
|
|
| T |
33988851 |
tttccttaggttggggggattgaggggaagcttggggtggcgtcgtcggttgttggcttaggaggaggatctagtgggggagtgtacatattttctttca |
33988950 |
T |
|
| Q |
164 |
aatgttgctttacaggataccatcaca--------gatgtctggtagtggcgcccaaatgtggctgatggttatacggtgtgcgatgtgtatcaaat--- |
252 |
Q |
| |
|
|||||| |||| ||||||| | | | ||||| |||||||||||| | ||||||| ||||||||||||||| || | |||||||||||| |
|
|
| T |
33988951 |
aatgttactttgcaggatattactaaagatgtttggatgtttggtagtggcgctctaatgtgggtgatggttatacggtttgtggtgtgtatcaaatgct |
33989050 |
T |
|
| Q |
253 |
------gcaggagatgcatagtcgcgatgaagttgttgatgcagtttgacataaatatgttcatttgaaggtttcaatttgt |
328 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||| | || |||||||||||||| |
|
|
| T |
33989051 |
catgaggcaggagatgcatagccgcgatgaagttgttgacgcagtttggcataaaaatgttcctctggaggtttcaatttgt |
33989132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 59 - 333
Target Start/End: Original strand, 15045155 - 15045437
Alignment:
| Q |
59 |
aatattttccttaggttggagggatggaggtgaagc-ttggggtggcggcgtcggttgttagtttgagaggaggatctagtgggggattgtatgtcttta |
157 |
Q |
| |
|
||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||| | || | |||||||||||||||| | ||||| ||||| |
|
|
| T |
15045155 |
aatattttccttaggttggggggaaggaggagaagctttggggtggcggcgtcggttgttggctt--ggggaggatctagtggggaagtgtatatctttg |
15045252 |
T |
|
| Q |
158 |
ctttctaatgttgctttacaggataccatcacagatgtctggtagtggcgcccaaatgtggctgatggttatacggtgtgcgatgtgtatcaaat----- |
252 |
Q |
| |
|
|| ||||||| |||| ||||||| | ||| |||| || |||||||||| ||||||||| ||||||||||||| | ||||||| |||| |
|
|
| T |
15045253 |
aattttaatgttactttgtaggatactactacaaatgtttgacagtggcgccctaatgtggcttatggttatacggtccatggtgtgtattaaatgctta |
15045352 |
T |
|
| Q |
253 |
----gcaggagatgcatagtcgcgatgaagttgttgatgcagtttgacataaatatgttcatttgaaggtttcaatttgtctgtg |
333 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |||| ||||| |||| ||| ||||||||||||||||| |||| |
|
|
| T |
15045353 |
tgaggcaggagatgcatagttgcaatgaagttgttgatgcaatttggtataaaaatgtgcatctgaaggtttcaatttgtgtgtg |
15045437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 33069630 - 33069526
Alignment:
| Q |
66 |
tccttaggttggagggatggaggtgaagcttgggg-tggcggcgtcggttgttagtttgagaggaggatctagtgggggattgtatgtctttactttcta |
164 |
Q |
| |
|
|||||||||||||| || ||| |||| |||||||| ||| |||| | ||||||| ||| ||||||||||||||| |||| |||| |||| | | ||||| |
|
|
| T |
33069630 |
tccttaggttggagtgaaggatgtgatgcttggggctggaggcggtgtttgttagcttgggaggaggatctagtgagggagtgtaggtctatgcattcta |
33069531 |
T |
|
| Q |
165 |
atgtt |
169 |
Q |
| |
|
||||| |
|
|
| T |
33069530 |
atgtt |
33069526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 28456413 - 28456477
Alignment:
| Q |
37 |
ataaggataagacggtggcggaaatattttccttaggttggagggatggaggtgaagcttggggt |
101 |
Q |
| |
|
|||||||||||||||| || || | ||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
28456413 |
ataaggataagacggtagcataattgttttccttaggttgggaggaaggaggagaagcttggggt |
28456477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 333
Target Start/End: Original strand, 38029085 - 38029391
Alignment:
| Q |
37 |
ataaggataagacggtggcggaaatattttccttaggttggagggatggaggtgaagcttgggg-tggcggcgtcggttgttagtttgagaggaggatct |
135 |
Q |
| |
|
||||||| ||||||||||||||||| | || ||||||||| ||| || || || |||||||| ||||||||| ||| ||| | ||| |||||||| || |
|
|
| T |
38029085 |
ataaggaaaagacggtggcggaaatgtgtttattaggttgggaggaaggtggagatgcttgggggtggcggcgtaggtggttggcttgggaggaggacct |
38029184 |
T |
|
| Q |
136 |
agtgggggattgtatgtctttactttctaatgttgctttacaggataccatcacagatgtctggtagtggcgcccaaatgtggctgatggttatacggtg |
235 |
Q |
| |
|
| || ||| ||||| ||||| |||||||||||| ||| ||||| || | || ||| | ||| ||||||| || ||||||| ||| | || || || |
|
|
| T |
38029185 |
aatgaaggaatgtatatctttgctttctaatgttattttgcaggaaactactactgatatatggcagtggcgtcctaatgtggtagattgatacacagtc |
38029284 |
T |
|
| Q |
236 |
tgcgatgtgtatcaaatgc---------aggagatgcatagtcgcgatgaagttgttgatgcagtttgacataaatatgttcatttgaaggtttcaattt |
326 |
Q |
| |
|
|| | |||||||||||||| |||||||||||| || |||||||||| |||| ||| |||| |||||| ||| || ||||||| ||||||||| |
|
|
| T |
38029285 |
tgtggtgtgtatcaaatgcttatgaggcaggagatgcataatcacgatgaagttattgacgcaatttggcataaaaatgctcctttgaagatttcaattt |
38029384 |
T |
|
| Q |
327 |
gtctgtg |
333 |
Q |
| |
|
|| |||| |
|
|
| T |
38029385 |
gtgtgtg |
38029391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 20416994 - 20417086
Alignment:
| Q |
40 |
aggataagacggtggcggaaatattttccttaggttggagggatggaggtgaagctt-ggggtggcggcgtcggttgttagtttgagaggagg |
131 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |||| | || ||||||| ||||||||| ||||||||||| | |||||| |||| |
|
|
| T |
20416994 |
aggatgagacggtggcggaaatgttttccttaggttggggggaagtagaggaagcttgggggtggcgacgtcggttgttggcttgagaagagg |
20417086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 20417085 - 20417218
Alignment:
| Q |
204 |
ggcgcccaaatgtggctgatggttatacggtgtgcgatgtgtatcaa--------atgcaggagatgcatagtcgcgatgaagttgttgatgcagtttga |
295 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | | |||||||||| | |||||| ||||||| | ||||||||||||||| |||||||| |
|
|
| T |
20417085 |
ggcgccctaatgtggctgatggttatacggtccgtggtgtgtatcaatgcttatgaggcaggaaatgcataaccacgatgaagttgttgacgcagtttgg |
20417184 |
T |
|
| Q |
296 |
cataaatatgtt-catttgaaggtttcaatttgt |
328 |
Q |
| |
|
|||| | ||||| | ||||||||||||||||||| |
|
|
| T |
20417185 |
catacaaatgttccttttgaaggtttcaatttgt |
20417218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 33021569 - 33021715
Alignment:
| Q |
37 |
ataaggataagacggtggcggaaatattttccttaggttggagggatggaggtgaagctt-ggggtggcggcgtcggttgttagtttgagaggaggatct |
135 |
Q |
| |
|
|||||||||||||||| || |||| ||||| ||||||||| || ||||| ||||||| |||||||||||||| |||| | | || ||||| || || |
|
|
| T |
33021569 |
ataaggataagacggtagcataaatgttttctttaggttgggaggtaggaggagaagcttgggggtggcggcgtcagttgctggcgtgggaggaagacct |
33021668 |
T |
|
| Q |
136 |
agtgggggattgtatgtctttactttctaatgttgctttacaggata |
182 |
Q |
| |
|
|| |||| | |||| ||||| ||||||||||| |||| ||||||| |
|
|
| T |
33021669 |
aggggggaaatgtacatctttgttttctaatgttactttgcaggata |
33021715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University