View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_43 (Length: 334)
Name: NF20539_low_43
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 11363410 - 11363106
Alignment:
| Q |
12 |
agagattagcttaagatggcgtcttaaagctgtaatattcgattctgctcaattataaaatatagaacatttaaattagatcaattatatagtgtgtgca |
111 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11363410 |
agagattagctttagatggcgtcttaaagctgtaatattcgattctgctcaattataaaatatagaacatttaaatttgatcaattatatagtgtgtgca |
11363311 |
T |
|
| Q |
112 |
tgacttatcaaaaataaaatatagtatgtgtgcctgcactgattgcaataatatagtttgtgtgcaagatgattaaacataagtgttttcattgaaaagt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11363310 |
tgacttatcaaaaataaaatatagtatgtgtgcctgcactgattgcaataatatagtttgtgtgcaagatgattaaacataagtgttttcattgaaaagt |
11363211 |
T |
|
| Q |
212 |
cacctaacagttcatcaggcatttggcttccgtttgcaattccaaccacagattttcgctgcaaacacatacttaatttaaatacaagtaattcagagga |
311 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11363210 |
cacctaacagttcatcaggcatttggcttccggttgcaattccaaccacagattttctctgcaaacacatacttaattt-aatacaagtaattcagagga |
11363112 |
T |
|
| Q |
312 |
acttaa |
317 |
Q |
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|||||| |
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| T |
11363111 |
acttaa |
11363106 |
T |
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