View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_low_45 (Length: 332)

Name: NF20539_low_45
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_low_45
NF20539_low_45
[»] chr1 (6 HSPs)
chr1 (206-319)||(14999132-14999243)
chr1 (174-323)||(43013352-43013501)
chr1 (174-323)||(50151921-50152070)
chr1 (195-284)||(26724180-26724269)
chr1 (195-284)||(26732297-26732386)
chr1 (174-295)||(38864261-38864380)
[»] chr2 (3 HSPs)
chr2 (174-261)||(6999659-6999746)
chr2 (195-284)||(42482038-42482127)
chr2 (180-303)||(14360890-14361013)
[»] chr5 (4 HSPs)
chr5 (174-284)||(14135593-14135703)
chr5 (174-284)||(27513406-27513516)
chr5 (174-295)||(1462804-1462924)
chr5 (174-226)||(38694213-38694265)
[»] chr7 (3 HSPs)
chr7 (174-284)||(19124512-19124623)
chr7 (195-274)||(27922479-27922558)
chr7 (174-284)||(42062895-42063004)
[»] chr3 (2 HSPs)
chr3 (271-323)||(34021255-34021307)
chr3 (180-257)||(7945051-7945128)
[»] chr8 (3 HSPs)
chr8 (180-295)||(42146844-42146958)
chr8 (174-284)||(31664089-31664198)
chr8 (174-284)||(35177139-35177249)
[»] chr6 (1 HSPs)
chr6 (174-261)||(18059220-18059307)
[»] scaffold0060 (1 HSPs)
scaffold0060 (174-289)||(61320-61435)
[»] chr4 (1 HSPs)
chr4 (174-257)||(33747414-33747496)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 206 - 319
Target Start/End: Complemental strand, 14999243 - 14999132
Alignment:
Q  206 tccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatctgcaccaaataaaatctatcaacttcatctgt 305  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  14999243 tccaagatggaccactttttt--taaccattagattaaatcagctaccaattcttaccatagtccatctgcaccaaataaaatatatcaacttcatctgt 14999146  T
Q  306 ctatcattgcaagc 319  Q
     |||| ||||||||    
T  14999145 ttatcgttgcaagc 14999132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 174 - 323
Target Start/End: Complemental strand, 43013501 - 43013352
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| ||||||||||| ||||| || |||| | |||||||||||| |||||| | |||||||||||||||||||||||||||||||| |||||| ||||    
T  43013501 gtgccatttagcttggacctttgcagatttggttcaagatggaccaattttttttcaaccattagattaaatcagctaccaattcttatcatagtccatc 43013402  T
Q  274 tgcaccaaataaaatctatcaacttcatctgtctatcattgcaagctttc 323  Q
    |||| |||||| || | ||||||||||||| |||||||||||||||||||    
T  43013401 tgcatcaaatacaacccatcaacttcatctctctatcattgcaagctttc 43013352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 174 - 323
Target Start/End: Complemental strand, 50152070 - 50151921
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| ||||||||||||||||| || |||| || ||||||||||| |||||| | |||||||| ||||||||||||||||||||||| |||||| ||||    
T  50152070 gtgccatttagcttggatctttgcagatttggtctaagatggaccaattttttttcaaccattaaattaaatcagctaccaattcttatcatagtccatc 50151971  T
Q  274 tgcaccaaataaaatctatcaacttcatctgtctatcattgcaagctttc 323  Q
    | || |||||| || | ||||||||||| | |||||||||||||||||||    
T  50151970 tacatcaaatacaacccatcaacttcatatctctatcattgcaagctttc 50151921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 26724269 - 26724180
Alignment:
Q  195 tgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatctgcaccaaata 284  Q
    |||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| | ||||||||||| ||| || ||||  |||||||||    
T  26724269 tgaagttttggtctaagatggaccaatttttttttaacctttagattgaatcaacaaccaattcttatcatggtccatccacaccaaata 26724180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 26732386 - 26732297
Alignment:
Q  195 tgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatctgcaccaaata 284  Q
    |||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| | ||||||||||| ||| || ||||  |||||||||    
T  26732386 tgaagttttggtctaagatggaccaatttttttttaacctttagattgaatcaacaaccaattcttatcatggtccatccacaccaaata 26732297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 38864380 - 38864261
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| |||| |||||| |  |||||||||| || ||||||||||| |||||  |||||| ||||||| ||||| | | ||||||||| ||| || ||||    
T  38864380 gtgccatttaacttggacccatgaagttttggtctaagatggaccaattttt--ttaacctttagattgaatcaacaatcaattcttatcatggtccatc 38864283  T
Q  274 tgcaccaaataaaatctatcaa 295  Q
      ||||||||| |||| |||||    
T  38864282 cacaccaaatacaatccatcaa 38864261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 6999659 - 6999746
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattctta 261  Q
    ||||| ||||||||||| || |||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| | |||||||||||    
T  6999659 gtgccatttagcttggacctatgaagttttggtctaagatggaccattttttttttaacctttagattgaatcaacaaccaattctta 6999746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 42482127 - 42482038
Alignment:
Q  195 tgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatctgcaccaaata 284  Q
    |||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| | ||||||||||| ||| || ||||  |||||||||    
T  42482127 tgaagttttggtctaagatggaccaatttttttttaacctttagattgaatcaacaaccaattcttatcatggtccatccacaccaaata 42482038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 14361013 - 14360890
Alignment:
Q  180 tttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatctgcacc 279  Q
    |||||||| || | ||| ||||||| || ||||||||||| |||||| |  ||| ||||||||||||| ||| ||||||||| ||| ||  |||  ||||    
T  14361013 tttagctttgacccttgtagttttggtctaagatggaccaattttttttccacctttagattaaatcatctagcaattcttatcatggtctatccacacc 14360914  T
Q  280 aaataaaatctatcaacttcatct 303  Q
    | ||| || |||||||||| ||||    
T  14360913 atatataacctatcaactttatct 14360890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 14135593 - 14135703
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| ||||||||||| |  |||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| | ||||||||||| ||| || ||||    
T  14135593 gtgccatttagcttggacccatgaagttttggtctaagatggaccaatttttttttaacctttagattgaatcaacaaccaattcttatcatggtccatc 14135692  T
Q  274 tgcaccaaata 284  Q
      |||||||||    
T  14135693 cacaccaaata 14135703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 27513406 - 27513516
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| ||||||||||| |  |||||||||  || ||||||||||| |||| | |||||| ||||||| ||||| | ||||||||||| ||| || ||||    
T  27513406 gtgccatttagcttggacccatgaagtttttgtctaagatggaccaattttattttaacctttagattgaatcaacaaccaattcttatcatggtccatc 27513505  T
Q  274 tgcaccaaata 284  Q
      |||||||||    
T  27513506 cacaccaaata 27513516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 295
Target Start/End: Original strand, 1462804 - 1462924
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| ||||||||||| |  ||||||||| ||| ||||| || || |||||| |||||| ||||||| ||||| | ||||||||||| ||| || ||||    
T  1462804 gtgccatttagcttggacccatgaagttttaatctaagatagatcaatttttt-ttaacctttagattgaatcaacaaccaattcttatcatggtccatc 1462902  T
Q  274 tgcaccaaataaaatctatcaa 295  Q
      || |||||| |||| |||||    
T  1462903 cacatcaaatacaatccatcaa 1462924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 38694213 - 38694265
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccactttttt 226  Q
    ||||| |||||||||||||| |||||||||| |  ||||||||||| ||||||    
T  38694213 gtgccatttagcttggatctatgaagttttggtttaagatggaccaatttttt 38694265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 19124623 - 19124512
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagc-taccaattcttaccatagttcat 272  Q
    ||||| ||||||||||| |  |||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| |  ||||||||||| ||| ||||||    
T  19124623 gtgccatttagcttggacccatgaagttttggtctaagatggaccaatttttttttaacctttagattgaatcaacaaaccaattcttatcatggttcat 19124524  T
Q  273 ctgcaccaaata 284  Q
    |  |||||||||    
T  19124523 ccacaccaaata 19124512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 27922479 - 27922558
Alignment:
Q  195 tgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatct 274  Q
    |||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| | ||||||||||| ||| || |||||    
T  27922479 tgaagttttggtctaagatggaccaatttttttttaacctttagattgaatcaacaaccaattcttatcatggtccatct 27922558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 42063004 - 42062895
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| |||||||||||||  |||| ||||| || || ||| |||| |||||| |||||| ||| ||| ||||| | ||||||||||| ||| |||||||    
T  42063004 gtgccatttagcttggatcaatgaaattttggtctaaaatgaaccaatttttt-ttaacctttaaattgaatcaacaaccaattcttatcatggttcatc 42062906  T
Q  274 tgcaccaaata 284  Q
      |||||||||    
T  42062905 cacaccaaata 42062895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 34021307 - 34021255
Alignment:
Q  271 atctgcaccaaataaaatctatcaacttcatctgtctatcattgcaagctttc 323  Q
    ||||||| |||||| |||| ||||||||||||| |||||||||||||||||||    
T  34021307 atctgcatcaaatacaatccatcaacttcatctctctatcattgcaagctttc 34021255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 7945128 - 7945051
Alignment:
Q  180 tttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaatt 257  Q
    |||||||||||||  |||| |||||    ||||||||||| |||||| |||||| ||||||| ||||| |||||||||    
T  7945128 tttagcttggatcaatgaaattttgggttaagatggaccaatttttttttaacctttagattgaatcaactaccaatt 7945051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 42146958 - 42146844
Alignment:
Q  180 tttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatctgcacc 279  Q
    |||||||||||||   ||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| | ||||||||||| ||| || ||||  || |    
T  42146958 tttagcttggatccaagaagttttggtctaagatggaccaatttttt-ttaacctttagattgaatcaacaaccaattcttatcatggtccatccacatc 42146860  T
Q  280 aaataaaatctatcaa 295  Q
    ||||| |||| |||||    
T  42146859 aaatacaatccatcaa 42146844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 31664089 - 31664198
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| ||||||||| | |  |||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| | ||||||||||| ||| || ||||    
T  31664089 gtgccatttagcttgaacccatgaagttttggtctaagatggaccaatttttt-ttaacctttagattgaatcaacaaccaattcttatcatggtccatc 31664187  T
Q  274 tgcaccaaata 284  Q
      |||||||||    
T  31664188 cacaccaaata 31664198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 35177249 - 35177139
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| |||||||| || |  |||||||||| |  ||||||||||| |||||| |||||| ||||||| ||||| | || |||||||| ||| |||||||    
T  35177249 gtgccatttagcttagacccatgaagttttggtttaagatggaccaatttttttttaacctttagattgaatcaacaactaattcttatcatggttcatc 35177150  T
Q  274 tgcaccaaata 284  Q
      |||||||||    
T  35177149 cacaccaaata 35177139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 18059307 - 18059220
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattctta 261  Q
    ||||| ||||||||||| |  |||||||||| || |||||||| || |||||| |||||| ||||||| ||||| | |||||||||||    
T  18059307 gtgccatttagcttggacccatgaagttttggtctaagatggatcaatttttttttaacctttagattgaatcaacaaccaattctta 18059220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 61435 - 61320
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaattcttaccatagttcatc 273  Q
    ||||| ||||||||||| |  |||| ||||| || |||||||| || |||||| |||||| ||||||| |||||   ||||||||||| ||| || ||||    
T  61435 gtgccatttagcttggacccatgaaattttggtctaagatggatcaatttttttttaacctttagattgaatcaataaccaattcttatcatggtccatc 61336  T
Q  274 tgcaccaaataaaatc 289  Q
      ||||||||| ||||    
T  61335 cacaccaaatacaatc 61320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 33747414 - 33747496
Alignment:
Q  174 gtgccgtttagcttggatctttgaagttttgatccaagatggaccacttttttcttaaccattagattaaatcagctaccaatt 257  Q
    ||||| ||||||||||| |  |||||||||| || ||||||||||| |||||| |||||| ||||||| ||||| | |||||||    
T  33747414 gtgccatttagcttggacccatgaagttttggtctaagatggaccaatttttt-ttaacctttagattgaatcaacaaccaatt 33747496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University