View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_46 (Length: 329)
Name: NF20539_low_46
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 31603810 - 31603504
Alignment:
| Q |
9 |
agcataggtatttctcagttggtttcaaaggtatgctgcatcgcatggtagtcgcaggggactccaaacccctactcacgtctaatatgtatacgatatc |
108 |
Q |
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| T |
31603810 |
agcataggtatttctcagttggtttcaaaggtatgctgcatcgcatggtagtcgtaggggactccaaacccctactcacgtctaatatgtatacgatatc |
31603711 |
T |
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| Q |
109 |
atgattttttgcaaaggtaaacgaggtttgatatagcttgtgaaccattataggagggcatggcgaatgctctggcaaattgattagctttgataaatca |
208 |
Q |
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| T |
31603710 |
atgattttttgcaaaggtaaacgaggtttgatatagcccgtgaaccattataggagggcatggcgaatgctctggcaaattgattagctttgacaaatca |
31603611 |
T |
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| Q |
209 |
aaatcttattctcgaatacactgggaattcactgctggtactctatcatttatccataatgggaaggattcagttagtcaagtctgtcattcatggtatg |
308 |
Q |
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| T |
31603610 |
aaatcttattctcgaatacactgggaattcactgctggtactctatcatttatccataatgggaaggattcagttagtcaagtctgtcattcatggtatg |
31603511 |
T |
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| Q |
309 |
cttattt |
315 |
Q |
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||||||| |
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| T |
31603510 |
cttattt |
31603504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 31606171 - 31606101
Alignment:
| Q |
149 |
tgaaccattataggagggcatggcgaatgctctggcaaattgattagctttgataaatcaaaatcttattct |
220 |
Q |
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| T |
31606171 |
tgaaccattttaggagg-catggtgaatgctctggctaattgattagctttgacaaatcaaaatcttattct |
31606101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 31606064 - 31605969
Alignment:
| Q |
223 |
aatacactgggaattcactgctggtactct----atcatttatccataatgggaaggattcagttagtcaagtctgtcattcatggtatgcttattt |
315 |
Q |
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| T |
31606064 |
aatacactgggaatttactgccggtactctccctatcatttatccataactggaaggactcgattagtcaagtctgtc-ttcatggtatgcttattt |
31605969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 31606247 - 31606219
Alignment:
| Q |
16 |
gtatttctcagttggtttcaaaggtatgc |
44 |
Q |
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| T |
31606247 |
gtatttctcagttggtttcaaaggtatgc |
31606219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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