View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_low_5 (Length: 692)
Name: NF20539_low_5
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 658; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 18 - 679
Target Start/End: Complemental strand, 3208910 - 3208249
Alignment:
| Q |
18 |
cacacagccagcacggctgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtactgcaattggcatggcaccatatgcacacttgg |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208910 |
cacacagccagcacggccgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtactgcaattggcatggcaccatatgcacacttgg |
3208811 |
T |
|
| Q |
118 |
caatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgcagttgatgatgatgttgatgtactttctctctc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3208810 |
caatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgcagttgatgatgatgttgatgtactttctctctc |
3208711 |
T |
|
| Q |
218 |
cctcggaggaccctcctctcctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3208710 |
cctcggaggaccctcctctcctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaat |
3208611 |
T |
|
| Q |
318 |
tcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagcttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3208610 |
tcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagcttg |
3208511 |
T |
|
| Q |
418 |
gcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3208510 |
gcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtga |
3208411 |
T |
|
| Q |
518 |
tgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagcc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3208410 |
tgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagcc |
3208311 |
T |
|
| Q |
618 |
aaaggtcaagcagttaaagatgccggtggtgctgctatgatacttttgaacagtgaaggtga |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3208310 |
aaaggtcaagcagttaaagatgccggtggtgctgctatgatacttttgaacagtgaaggtga |
3208249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 667
Target Start/End: Complemental strand, 3202936 - 3202287
Alignment:
| Q |
18 |
cacacagccagcacggctgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtactgcaattggcatggcaccatatgcacacttgg |
117 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3202936 |
cacacggccagcacggccgctggaaggcccgtgaaaggtgctaatgtctttggtaatgccaatggtactgcaattggcatggcaccatatgcacacttgg |
3202837 |
T |
|
| Q |
118 |
caatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgcagttgatgatgatgttgatgtactttctctctc |
217 |
Q |
| |
|
||||||||||||||||| | ||| |||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| ||||||||||| |
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|
| T |
3202836 |
caatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatggatgttgctgttgatgatggtgttgatgttctttctctctc |
3202737 |
T |
|
| Q |
218 |
cctcggaggaccctcctctcctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaat |
317 |
Q |
| |
|
||| ||| |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |
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|
| T |
3202736 |
ccttggacaaccctctacttctttctttgaaagtggaattgcacttggtgcatttagtgcaattcaaaagggaatttttgttagttgttctgctggaaat |
3202637 |
T |
|
| Q |
318 |
tcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagcttg |
417 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3202636 |
tcaggtccttttcatggtacattggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaaatagaggcagtagctaagcttg |
3202537 |
T |
|
| Q |
418 |
gcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtga |
517 |
Q |
| |
|
| || ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
3202536 |
gggatgggacggaatatctcggagaatcagttttccaaccaaaagactttgcatcaacattattgccacttgtgtatgcaggtgcaattaacacaagtga |
3202437 |
T |
|
| Q |
518 |
tgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagcc |
617 |
Q |
| |
|
||||| ||||||||||||| |||| || ||||| |||| ||||||||||||||||| |||| ||||||||||||| ||| | |||| |||||||||| |
|
|
| T |
3202436 |
tgatttcattgccttttgtaatcctttttccatggagaatgttgatgttaagggaaaggtagtagtgtgtgagcaagatggatcggttgaaagagtagcc |
3202337 |
T |
|
| Q |
618 |
aaaggtcaagcagttaaagatgccggtggtgctgctatgatacttttgaa |
667 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3202336 |
aaaggtcaagcagttaaagatgctggtggtgctgctatgatacttttgaa |
3202287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 646
Target Start/End: Complemental strand, 3216849 - 3216221
Alignment:
| Q |
18 |
cacacagccagcacggctgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtactgcaattggcatggcaccatatgcacacttgg |
117 |
Q |
| |
|
||||| |||||||||||||||||||||| || || || || |||||||| || || ||||| ||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
3216849 |
cacacggccagcacggctgctggaaggcttgtacagggggccaatgtcttcggcaacgctaaaggtacggcaacaggcatggcaccagatgcacacttgg |
3216750 |
T |
|
| Q |
118 |
caatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgcagttgatgatgatgttgatgtactttctctctc |
217 |
Q |
| |
|
|||| ||||||||||||| || | |||||| |||| ||| ||| |||||| |||||||||||||||||||| || | ||||||||||||||| |||| |
|
|
| T |
3216749 |
caatctacaaagtatgcagcagcagtggttgtcctgagagtgcaacattagcaggaatggatgctgcagttgaagacggtgttgatgtactttcaatctc |
3216650 |
T |
|
| Q |
218 |
cctcggaggaccctcctctcctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaat |
317 |
Q |
| |
|
||| |||||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||| |||| |
|
|
| T |
3216649 |
ccttaacggacccaccaaccctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagggaattttcgttagttgctcagctggaaat |
3216550 |
T |
|
| Q |
318 |
tcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagcttg |
417 |
Q |
| |
|
| |||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| || ||| ||||||| |||| |
|
|
| T |
3216549 |
tttggtcctgattatggtacaacgtctaatgaagcaccatggattctaactgttggtgctagcacaactgatagaaaaatagaagcaatagctaaacttg |
3216450 |
T |
|
| Q |
418 |
gcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtga |
517 |
Q |
| |
|
|| ||||| | ||||| ||||||||||||| || ||||||||||| |||||||| ||| | ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
3216449 |
gcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgttaatataagtga |
3216350 |
T |
|
| Q |
518 |
tgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagcc |
617 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||||| ||||||| ||||| | || ||| |
|
|
| T |
3216349 |
taattccattgccttttgtggtcctatttccatgaagaacattgatgttaagggaaaggtagttttgtgtgaggaaggtggacttgtttcacaagcagcg |
3216250 |
T |
|
| Q |
618 |
aaaggtcaagcagttaaagatgccggtgg |
646 |
Q |
| |
|
|||| ||||||||||||||| || ||||| |
|
|
| T |
3216249 |
aaagctcaagcagttaaagacgctggtgg |
3216221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 240 - 399
Target Start/End: Complemental strand, 3226532 - 3226373
Alignment:
| Q |
240 |
ttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggtactt |
339 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||| ||||| |||||| || ||||||||||||| || |||||||| || |||||| ||| | ||| |
|
|
| T |
3226532 |
ttctttgaagacccaattgcaattggtgcttttgctgcaactcaaaatggtgtttttgttagttgctctgctgcaaactctggtcctggatatagcactc |
3226433 |
T |
|
| Q |
340 |
tgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattg |
399 |
Q |
| |
|
| || |||||||| || ||||| || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
3226432 |
tctccaatgaagctccttggatcctcactgttggtgctagcacaattgacagaaaaattg |
3226373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 240 - 399
Target Start/End: Complemental strand, 3221550 - 3221391
Alignment:
| Q |
240 |
ttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggtactt |
339 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||| ||| | |||||| || ||||||||||||| || |||||||| || |||||| || | ||| |
|
|
| T |
3221550 |
ttctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgcaaactccggtcctggatacagcactc |
3221451 |
T |
|
| Q |
340 |
tgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattg |
399 |
Q |
| |
|
| || |||||||| || ||| | || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
3221450 |
tctccaatgaagctccttgggtcctcactgttggtgccagcacaattgatagaaaaattg |
3221391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 240 - 399
Target Start/End: Complemental strand, 3231783 - 3231624
Alignment:
| Q |
240 |
ttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggtactt |
339 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||| ||| | |||||| || ||||||||||||| || |||||||| || |||||| || | ||| |
|
|
| T |
3231783 |
ttctttgaagacccaattgcaattggtgcttttgctgctactcaaaatggtgtttttgttagttgctctgctgcaaactctggtcctggatacagcactc |
3231684 |
T |
|
| Q |
340 |
tgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattg |
399 |
Q |
| |
|
| || |||||||| || ||||| || ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
3231683 |
tttccaatgaagctccttggatcctcactgttggtgcaagcacaattgatagaaaaattg |
3231624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 3178363 - 3178415
Alignment:
| Q |
345 |
aatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaat |
397 |
Q |
| |
|
|||||||| || ||||| || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
3178363 |
aatgaagctccttggatcctcactgtaggtgcaagcacaattgacagaaaaat |
3178415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 3240477 - 3240425
Alignment:
| Q |
345 |
aatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaat |
397 |
Q |
| |
|
|||||||| || ||||| || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
3240477 |
aatgaagctccttggatcctcactgtaggtgcaagcacaattgacagaaaaat |
3240425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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