View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_low_50 (Length: 297)
Name: NF20539_low_50
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_50 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 42766947 - 42767217
Alignment:
| Q |
11 |
aatgtagatttaattaattgtaattttgatctcttaagttttatttaatcgtgaaattaatcttccacttttaaaatttaccggtatgaatcattttctc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42766947 |
aatgtagatttaattaattgtaattttgatctcttaagttttatttaatcgtgaaattaatcttccacttttaaaatttaccggtatgaatcattttctc |
42767046 |
T |
|
| Q |
111 |
aattcttagattaaaaaatacaagctgataatgtgtaagtagaattgtcaaatggtctcttgactataatactcaattgcataaatggtccatatcaaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42767047 |
aattcttagattaaaaaatacaagctgataatgtgtaagtagaattgtcaaatggtctcttgactataatactcaaatgcataaatggtccatatcaaac |
42767146 |
T |
|
| Q |
211 |
agactagttagtcgtttgtcacgaagaaaggaaaaaatactctcattttttggtttattcatttactattt |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42767147 |
agactagttagtcgtttgtcacgaagaaagtaaaaaatactctcattttttggtttattcatttactattt |
42767217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University