View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_53 (Length: 285)
Name: NF20539_low_53
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 24125520 - 24125265
Alignment:
| Q |
20 |
tgctctctatgggacacatgtggaatcaactttccacttgtttttctttctgaaaatggttccgttgaagnnnnnnntcatacatcatgtacctattacg |
119 |
Q |
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| T |
24125520 |
tgctctctataggacacatgtggaatcaactttccacttgtttttctttctgaaaatggttccgttgaagaaaaaaatcatacatcatgtacctattatg |
24125421 |
T |
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| Q |
120 |
agtggaaattggccttgattttatattggagctaatagagtagggcgatggggggtgagtctaggtcagactatctctggaaacaaggacctagtttttg |
219 |
Q |
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| T |
24125420 |
agtggaaattggccttgattttatattggagctaatagagtagggcgatggggggtgagtctaggtcagactatccctggaaacaaggacctagtttttg |
24125321 |
T |
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| Q |
220 |
tcaaccccacctgagagtgttcacttttcttattttgaaagttttcaaatgttctt |
275 |
Q |
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| T |
24125320 |
tcaaccccacccgggagtgttcacttttcttattttgaaagtttccaaatgttctt |
24125265 |
T |
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Back To:
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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 45163326 - 45163412
Alignment:
| Q |
183 |
ggtcagactatctctggaaacaaggacctagtttttgtcaaccccacctgagagtgttcacttttcttattttgaaagttttcaaat |
269 |
Q |
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| T |
45163326 |
ggtcaaactatccctgaaagcaaggacctggttcttgccaaccccacctaggagtgttcactttacttattttgaaagttttcaaat |
45163412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 45163235 - 45163287
Alignment:
| Q |
29 |
tgggacacatgtggaatcaactttccacttgtttttctttctgaaaatggttcc |
82 |
Q |
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| T |
45163235 |
tgggacacatgtg-aatcaactttccacttgttcttctttctgaaaatggttcc |
45163287 |
T |
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