View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_54 (Length: 283)
Name: NF20539_low_54
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 271
Target Start/End: Complemental strand, 51937996 - 51937759
Alignment:
| Q |
29 |
ttcaatccatcaggtacgtacctacatattattatattcatgatcgatgctatatatgaattgaattaatactaattttgtgtttaatcaataatggatc |
128 |
Q |
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| T |
51937996 |
ttcaatccatcaggtacctacatat-tattattatattaatgatcgatgctatatatgaattgaattaatactaattttgtgtttaattaataatggatc |
51937898 |
T |
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| Q |
129 |
gatcagtgaatcgttggcgtcgttgacaagggagacaggacctaaggtggtgaaaggagacccagccagcaaagggagtagttcacacgtggatcatcac |
228 |
Q |
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| T |
51937897 |
----agtgaatcgttggcgtcgttgacaagggagacaggacctaaggtggtgaaaggagacccagccagcaaagggagtagttcacacgtggatcatcac |
51937802 |
T |
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| Q |
229 |
cagcatagtcctcttatttcaacagcatttgatgttagtgata |
271 |
Q |
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| T |
51937801 |
cagcatagtcctcttatttcaacagcatttgatgttagtgata |
51937759 |
T |
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