View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_58 (Length: 264)
Name: NF20539_low_58
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 11201367 - 11201114
Alignment:
| Q |
1 |
ctgatgtccaagtccgttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatctgctatacttttgatttatttctact |
100 |
Q |
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| T |
11201367 |
ctgatgtccaagtcagttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatctgctatacttttgatttatttctact |
11201268 |
T |
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| Q |
101 |
gcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtagaagacttaaggattatctgcacaatcaaagtgcttagacat |
200 |
Q |
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| T |
11201267 |
gcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtagaagacttaaggattatctgcacaatcaaagtgcttagacat |
11201168 |
T |
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| Q |
201 |
tttagatcctgatgtagtaaacctcaaatatgttttgttcattgcatgtctgtg |
254 |
Q |
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| T |
11201167 |
tttagatcctgatgtagtaaacctcaaatatgttttgtccattgcatgtctgtg |
11201114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 11162592 - 11162433
Alignment:
| Q |
1 |
ctgatgtccaagtccgttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatctgctatacttttgatttatttctact |
100 |
Q |
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| T |
11162592 |
ctgatgtccaagtcagttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatctgctatacttttgatttatttctact |
11162493 |
T |
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| Q |
101 |
gcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtaga |
160 |
Q |
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| T |
11162492 |
gcgcataatgtatatgaaggctcatttatatgttgcttccaactgtgcaaataaagtaga |
11162433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 11162436 - 11162385
Alignment:
| Q |
203 |
tagatcctgatgtagtaaacctcaaatatgttttgttcattgcatgtctgtg |
254 |
Q |
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| T |
11162436 |
tagatcctgatgtagtaaacctcaaatatgttttgtccattgcatgtctgtg |
11162385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 248995 - 249085
Alignment:
| Q |
164 |
cttaaggattatctgcacaatcaaagtgcttagacattttagatcctgatgtagtaaacctcaaatatgttttgttcattgcatgtctgtg |
254 |
Q |
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| T |
248995 |
cttaaggattatctgcacaatcaaagtgcttagacattttagatcctgaggtagtaaacctcaaatatgttttgtccattgcatgtctgtg |
249085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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