View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_low_63 (Length: 250)
Name: NF20539_low_63
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_63 |
 | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 43558058 - 43558244
Alignment:
| Q |
59 |
ataggttgtgacatagagatacctatgaataat----taatataaatgaaatatcaaaccttaggatcatttgatatatgattgagtactggagaggcaa |
154 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43558058 |
ataggttgtgacatagagatatctatgaataattaattaatataaatgaaatatcaaaccttaggatcatttgatatatgattgagtactggagaggcaa |
43558157 |
T |
|
| Q |
155 |
tgtgaaagacacctttgcatcccatgatcgcattgtcgaagctattttcttccattaaatcagcttggactagtttgagtctctctg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43558158 |
tgtgaaagacacctttgcatcccatgatcgcattgtcgaagctattttcttccattaaatcagcttggactagtttgagtctttctg |
43558244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 23471 - 23694
Alignment:
| Q |
10 |
tgtatagtctccatgatgtgaagattttgattaatgtataagcaagcttataggttgtgacatagagatacctatgaataattaatataaatgaaatatc |
109 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23471 |
tgtatagtctccatgatgtgaggattttaattaatgcat----gagcttataggttgtgacatagagatacctatgaa----taatataaatgaaatatc |
23562 |
T |
|
| Q |
110 |
aaaccttaggatcatttgatatatgattgagtactggagaggcaatgtgaaagacacctttgcatcccatgatcgcattgtcgaagctattttcttccat |
209 |
Q |
| |
|
| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
23563 |
acaccttaggaccatttgatatatgattgggtactggagaggcaatgtgaaagacagctttgcatcccatgatcgctttgtcgaagctattttgttccat |
23662 |
T |
|
| Q |
210 |
taaatcagcttggactagtttgagtctctctg |
241 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |
|
|
| T |
23663 |
taaatcagcttggactagttcgagtctttctg |
23694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University