View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_66 (Length: 249)
Name: NF20539_low_66
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_66 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 45125758 - 45125992
Alignment:
| Q |
1 |
aagtaaagattggtactttgaggttgattgatgaagattgatcatagatttcagaagaatcaacagcaagaggcattccatcactattaagagtgcatga |
100 |
Q |
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| T |
45125758 |
aagtaaagattggtactttgaggttgattgatgaagattgatcatacatttcagaagaatcaacagcaagaggcattccatcactattaagagtacatga |
45125857 |
T |
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| Q |
101 |
ttgtgggtcagatccatcagggctcaacatcaaagcacgaagaacccaagtaactgtgtgaatgtaagttgtcctattcttagcaagaagccatgttaat |
200 |
Q |
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| T |
45125858 |
ttgtgggtcagatccatcagggctcaacatcaaagcacgaagaacccaagtaactgtgtgaatgtaagttgtcctattcttagcaagaagccatgttaat |
45125957 |
T |
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| Q |
201 |
cccattagttcacaatctttgttatggatcttggt |
235 |
Q |
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| T |
45125958 |
cccattagttcacaatctttgttatggatcttggt |
45125992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 5463 - 5259
Alignment:
| Q |
28 |
ttgatgaagattgatcatagatttcagaagaatcaacagcaagaggcattccatcactattaagagtgcatgattgtgggtcagatccatcagggctcaa |
127 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||||||| | |||| |
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| T |
5463 |
ttgatgaagattgatcatagaactcagatgaatcaacagctagaggcattccatcactatttagagtgcatgattgtggtttagatccatctttgttcaa |
5364 |
T |
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| Q |
128 |
catcaaagcacgaagaacccaagtaactgtgtgaatgtaagttgtcctattcttagcaagaagccatgttaatcccattagttcacaatctttgttatgg |
227 |
Q |
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| T |
5363 |
caacaaagcacgaagaacgttagtaaccgtgtgaatataagccgtccgattcttcgacagaagccatgtcaagcccattagctcacaatctttgttgtga |
5264 |
T |
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| Q |
228 |
atctt |
232 |
Q |
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||||| |
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| T |
5263 |
atctt |
5259 |
T |
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