View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20539_low_67 (Length: 249)

Name: NF20539_low_67
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20539_low_67
NF20539_low_67
[»] chr6 (2 HSPs)
chr6 (16-249)||(13609363-13609596)
chr6 (87-155)||(31561110-31561178)
[»] chr4 (8 HSPs)
chr4 (16-246)||(31245312-31245542)
chr4 (30-155)||(31158951-31159076)
chr4 (30-155)||(31489919-31490044)
chr4 (27-162)||(31019495-31019630)
chr4 (27-162)||(31029376-31029511)
chr4 (30-60)||(31477218-31477248)
chr4 (30-60)||(31502340-31502370)
chr4 (18-54)||(31033784-31033820)
[»] chr7 (1 HSPs)
chr7 (20-246)||(14724595-14724818)
[»] chr5 (1 HSPs)
chr5 (26-246)||(17598944-17599168)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 13609363 - 13609596
Alignment:
Q  16 atcccttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609363 atcccttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatt 13609462  T
Q  116 tctagagatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgttttgtaggaaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609463 tctagagatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgttttgtaggaaag 13609562  T
Q  216 ctttcaaaagtgatgatatcttgagtggttatgc 249  Q
    ||||||||||||||||||||||||||||||||||    
T  13609563 ctttcaaaagtgatgatatcttgagtggttatgc 13609596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 31561110 - 31561178
Alignment:
Q  87 taggttcagggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatg 155  Q
    ||||| ||||||||||||||||  | |||||||||||||  ||||| |||| |||| ||||||| ||||    
T  31561110 taggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatg 31561178  T

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Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 31245312 - 31245542
Alignment:
Q  16 atcccttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatt 115  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| |||  || ||||||||||| |||||  ||||||||||||| ||| |||||    
T  31245312 atcccttatagttcttgataatgttgatcaagttgaacaactggataaattggctatgacacgagaatggctaggcacagggagtagaatcatcataatt 31245411  T
Q  116 tctagagatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgttttgtaggaaag 215  Q
    ||||||||||  |||||||||||||||||||||||||||||| | ||  |||| |||   || |||| |||| ||||||||| ||||||||||||||| |    
T  31245412 tctagagatgttcatatcttgagagagcatggagtagatgaagtgtacaaagttcgactcttggatcataataatgcccttcaattgttttgtaggaagg 31245511  T
Q  216 ctttcaaaagtgatgatatcttgagtggtta 246  Q
    ||||||| |||||||||||| |||| |||||    
T  31245512 ctttcaagagtgatgatatcatgagcggtta 31245542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 31159076 - 31158951
Alignment:
Q  30 ttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatggcca 129  Q
    |||||||||||||||||||||||||||| |||||| | |   | |  || |||||  ||||| |||||||||||||  |  |||||||||||||||  ||    
T  31159076 ttgataatgttgataaagttgaacaacttgataaattagctgtgaatcgtgaatgcttaggtgcagggagtagaatcgttataatttctagagatgaaca 31158977  T
Q  130 tatcttgagagagcatggagtagatg 155  Q
    |||||||| |||| ||||||| ||||    
T  31158976 tatcttgaaagagtatggagttgatg 31158951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 31489919 - 31490044
Alignment:
Q  30 ttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatggcca 129  Q
    ||||||||||||||||||||| |||||| |||||| |||   | |  || |||||  ||||| ||||||||||||| ||  |||||||| ||||||  ||    
T  31489919 ttgataatgttgataaagttggacaacttgataaattgggtgtgaatcgtgaatggttaggtgcagggagtagaatcattataatttctggagatgaaca 31490018  T
Q  130 tatcttgagagagcatggagtagatg 155  Q
    |||||||| |||| ||||||| ||||    
T  31490019 tatcttgaaagagtatggagttgatg 31490044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 31019630 - 31019495
Alignment:
Q  27 ttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatgg 126  Q
    |||| ||||||||||||||||||||||| || |||||  | |   |||  || |||||| |||||  |||||||||||| ||  |||||||||||||||     
T  31019630 ttctcgataatgttgataaagttgaacagctcgataagttagctttaaatcgtgaatgtttaggtgtagggagtagaatcattataatttctagagatga 31019531  T
Q  127 ccatatcttgagagagcatggagtagatgaaattta 162  Q
     ||||||||||  ||| ||||||| |||||| ||||    
T  31019530 gcatatcttgaatgagtatggagttgatgaagttta 31019495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 31029511 - 31029376
Alignment:
Q  27 ttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatgg 126  Q
    |||| ||||||||||||||||||||||| || |||||  | |   |||  || |||| | ||||| ||||||||||||| ||  |||||||||||||||     
T  31029511 ttctcgataatgttgataaagttgaacagctcgataagttagctttaaatcgtgaatatttaggtgcagggagtagaatcattataatttctagagatga 31029412  T
Q  127 ccatatcttgagagagcatggagtagatgaaattta 162  Q
     ||||||||||  ||| ||||||| |||||| ||||    
T  31029411 gcatatcttgaatgagtatggagttgatgaagttta 31029376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 31477218 - 31477248
Alignment:
Q  30 ttgataatgttgataaagttgaacaactgga 60  Q
    |||||||||||||||||||||||||||||||    
T  31477218 ttgataatgttgataaagttgaacaactgga 31477248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 31502340 - 31502370
Alignment:
Q  30 ttgataatgttgataaagttgaacaactgga 60  Q
    |||||||||||||||||||||||||||||||    
T  31502340 ttgataatgttgataaagttgaacaactgga 31502370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 31033820 - 31033784
Alignment:
Q  18 cccttgtagttcttgataatgttgataaagttgaaca 54  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  31033820 cccttctagttcttgataatgttgatcaagttgaaca 31033784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 14724595 - 14724818
Alignment:
Q  20 cttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttcta 119  Q
    |||| |||||||||||||||| |   |||||||||||| || ||| ||| ||| | | || |||| |||||  |||| |||||||| |||||||| ||||    
T  14724595 cttgaagttcttgataatgttca---agttgaacaacttgaaaaattggccatgaaatgataatggctaggcacaggaagtagaatcatcgtaatatcta 14724691  T
Q  120 gagatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgttttgtaggaaagcttt 219  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||  |||| |||    || ||| |||||||||||||| |||||||||||||||||||||    
T  14724692 gagatagccatatcttcagagagcatggagtagatgaagtttacaaagttcgactcataaatcataatgatgcccttcaattgttttgtaggaaagcttt 14724791  T
Q  220 caaaagtgatgatatcttgagtggtta 246  Q
     |||| ||| ||| || |||| |||||    
T  14724792 aaaaattgacgatgtcatgagcggtta 14724818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 17599168 - 17598944
Alignment:
Q  26 gttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtct----aggttcagggagtagaattatcgtaatttctaga 121  Q
    ||||||||||||||| || |||||||||||||||| ||| ||| ||| | | ||||||| ||    |||  || | |||||||| |||||||| ||||||    
T  17599168 gttcttgataatgttcatcaagttgaacaactggaaaaattggccatgaaatgagaatggctggctaggcacaagaagtagaatcatcgtaatatctaga 17599069  T
Q  122 gatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgttttgtaggaaagctttca 221  Q
    ||| |||||||||| ||||||||||||||||||||| ||||  |||| |||    || ||| |||||||||||||| ||||||||||||||||||||| |    
T  17599068 gatagccatatcttcagagagcatggagtagatgaagtttacaaagttcgactcataaatcataatgatgcccttcaattgttttgtaggaaagctttaa 17598969  T
Q  222 aaagtgatgatatcttgagtggtta 246  Q
    ||| ||| ||| || |||| |||||    
T  17598968 aaattgacgatgtcatgagcggtta 17598944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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