View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_low_69 (Length: 248)
Name: NF20539_low_69
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_69 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 24125522 - 24125750
Alignment:
| Q |
3 |
atgattcgactgaagattcaacaattaccttcgtaagaaaaagattaattctagtggaaagtctatccaataacgtttgctaagagatgacacatatatt |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24125522 |
atgatgcgactgaagattcaacaattaccttcgtaagaaaaagattaattccagtggaaagtatatccaataacgtttgctaagagatgacacataaatt |
24125621 |
T |
|
| Q |
103 |
atatcaaattgtaaaaaactaccatttacttttgttgtagatccgggagagcggcgaccagaagagacggaaacaccacatcaccgtctaaaaccttcag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
24125622 |
atatcaaattgtaaaaaactaccatttatttttgttggagatccgggagagcggcgaccagaagagacggaaacaccacattgccgtctaaaaccttaag |
24125721 |
T |
|
| Q |
203 |
atattcaatatataagtcatgtcttttat |
231 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
24125722 |
atattcaatatataagtcatgtcctttat |
24125750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 45162253 - 45162131
Alignment:
| Q |
53 |
ctagtggaaagtctatccaataacgtttgctaagagatgacacatatattat-atcaaattgt-aaaaaactaccatttacttttgttgtagatccggga |
150 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||||||||||| ||| | || ||| || |||||||||| ||||| |||||||| ||||| |||| |
|
|
| T |
45162253 |
ctagtggaaagtctatccaataacattttccgagagatgacacataaattttaatataatagtaaaaaaactacaatttatttttgttggagatctggga |
45162154 |
T |
|
| Q |
151 |
gagcggcgaccagaagagacgga |
173 |
Q |
| |
|
||||||| |||| || ||||||| |
|
|
| T |
45162153 |
gagcggcaaccacaaaagacgga |
45162131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 45163217 - 45163166
Alignment:
| Q |
10 |
gactgaagattcaacaattaccttcgtaagaaaaagattaattctagtggaa |
61 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| | |||||||||| |
|
|
| T |
45163217 |
gactgaagattcaacaatgaccttcataagaaaaagattgactctagtggaa |
45163166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University