View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_71 (Length: 247)
Name: NF20539_low_71
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 8722274 - 8722058
Alignment:
| Q |
15 |
gaatatatcaaaatgatcaaattgttatgagaaaataataatggggtttgtttgatatttacctggtaaatcccaaggtttaaacttgaatacatcaact |
114 |
Q |
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| T |
8722274 |
gaatatatcaaaatgatcacattgttataagaaaataataatgaggtttgtttgatatttacctggtaaatcccaaggtttaaacttgaatacatcaact |
8722175 |
T |
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| Q |
115 |
tcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagtagtttacaagctcttgatctgttggacggaatctgaatccaa |
214 |
Q |
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| T |
8722174 |
tcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagtagtttacaagctcttgatctgttggatggaatctgaatccaa |
8722075 |
T |
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| Q |
215 |
caggaagacaatcatga |
231 |
Q |
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| T |
8722074 |
caggaagacaatcatga |
8722058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 220
Target Start/End: Complemental strand, 8690867 - 8690720
Alignment:
| Q |
73 |
ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagt |
172 |
Q |
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| T |
8690867 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagt |
8690768 |
T |
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| Q |
173 |
agtttacaagctcttgatctgttggacggaatctgaatccaacaggaa |
220 |
Q |
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| T |
8690767 |
ggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa |
8690720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 8705173 - 8704992
Alignment:
| Q |
39 |
ttatgagaaaataataatggggtttgtttgatattt-acctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaa |
137 |
Q |
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| T |
8705173 |
ttatgagaaaataatgaaggg-tttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgtttacaat |
8705075 |
T |
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| Q |
138 |
ctcttcattgccaagtaacttgtttctgagatagtagtttacaagctcttgatctgttggacggaatctgaatccaacaggaa |
220 |
Q |
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| T |
8705074 |
ggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa |
8704992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 8740244 - 8740152
Alignment:
| Q |
44 |
agaaaataataatggggtttgtttgatatttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaa |
136 |
Q |
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| T |
8740244 |
agaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttcagctataacattgtttacaa |
8740152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 8723565 - 8723418
Alignment:
| Q |
69 |
atatttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgaga |
168 |
Q |
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| T |
8723565 |
atatttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaagcaacttatttctaagg |
8723466 |
T |
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| Q |
169 |
tagtagtttacaagctcttgatctgttggacggaatctgaatccaaca |
216 |
Q |
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| T |
8723465 |
tagtgattaactagctcttcacctgttggacaaaatctgaatccaaca |
8723418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 8738643 - 8738493
Alignment:
| Q |
78 |
tggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagtagttt |
177 |
Q |
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| T |
8738643 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta |
8738544 |
T |
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| Q |
178 |
acaagctcttgatctgttggacggaatctgaatccaacaggaagacaatca |
228 |
Q |
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| T |
8738543 |
actagttcttcatttgttggtcggaatctgaatccgacaggaagaaaatca |
8738493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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