View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_76 (Length: 241)
Name: NF20539_low_76
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 15007864 - 15007649
Alignment:
| Q |
17 |
aatatcaaccactaaaatcaaatatcaa------agcaatctcaacaaaacatcataaaaagaagtaacgagaatcaatattacctcaagttgatgcgaa |
110 |
Q |
| |
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||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||| ||||||| |
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| T |
15007864 |
aatatcaaccactaaaatcaaatatcatttaatgaacaatctcaacaaaacatcgtaaaaagaagtaatgtgaatcaatattaccttaagttcatgcgaa |
15007765 |
T |
|
| Q |
111 |
aatttatttgaact---tcacatgatttgaattatgaggcataactaaaagacaattatagaaaattgtatgatgagagccataagtattatatgatata |
207 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15007764 |
aatttatttgaactaattcacatgatttgaattatgaggcctaactaaaagacaattatagaaaattgtatgatgagagccataagtattatatgatata |
15007665 |
T |
|
| Q |
208 |
ggttggattcaatttt |
223 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
15007664 |
ggttggattcaatttt |
15007649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 40787473 - 40787271
Alignment:
| Q |
17 |
aatatcaaccactaaaatcaaatatcaa------agcaatctcaacaaaacatcataaaaagaagtaacgagaatcaatattacctcaagttgatgcgaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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|
| T |
40787473 |
aatatcaaccactaaaatcaaatatcatttgatgagcaatctcaactaaatatcataaaaagaagtaatgagaatcaatattacctcaagatcatgcgaa |
40787374 |
T |
|
| Q |
111 |
aatttatttgaacttcacatgatttgaattatgaggcataactaaaagacaattatagaaaattgtatgatgagagccataagtattatatgatataggt |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40787373 |
aatttatttaaacttcacatgatttgaattatgaggcataactaaa----------tgaaaattgtatgatgagagccataagtattatatgatataggt |
40787284 |
T |
|
| Q |
211 |
tggattcaatttt |
223 |
Q |
| |
|
||||||||||||| |
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|
| T |
40787283 |
tggattcaatttt |
40787271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 21143307 - 21143251
Alignment:
| Q |
45 |
agcaatctcaacaaaacatcataaaaagaagtaacgagaatcaatattacctcaagt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
21143307 |
agcaatctcaacaaaacatcataaaaagaagtaacgagaatcaatattaccacaagt |
21143251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 52311116 - 52311151
Alignment:
| Q |
66 |
taaaaagaagtaacgagaatcaatattacctcaagt |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
52311116 |
taaaaagaagtaacgagaatcaatattacctcaagt |
52311151 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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