View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_79 (Length: 241)
Name: NF20539_low_79
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_79 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 23506289 - 23506529
Alignment:
| Q |
1 |
aaccatatttgtggatctaaaggtccaaaaccttgtaacacttcaatacaacttcaatacctatattttaaggtggttcacttcgtttctctttctacat |
100 |
Q |
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| T |
23506289 |
aaccatatttgtggatctaaaggtccaaaaccttgtaacacttcaatacaacttcaatacctatcttttaaggtggttcacttggtttctctttctacat |
23506388 |
T |
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| Q |
101 |
ccaagccacaaaatcccttagattttttcctcaaaaccattaatgaaaaccatcgtttcatacgtcaaactcaaaatcagtgaacaatgaataaccatta |
200 |
Q |
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| T |
23506389 |
ccaagccacaaaatcccttagattttttcctcaaaaccattaatgaaaaccatcgtttcatacgtcaaactcaaaatcagtgaacaatgaataaccatta |
23506488 |
T |
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| Q |
201 |
aacaatttttgggacaaatagtaacctaaaacattgcctat |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
23506489 |
aacaatttttgggacaaatagtaacctaaaacattgcctat |
23506529 |
T |
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