View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20539_low_8 (Length: 621)
Name: NF20539_low_8
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 39824087 - 39824575
Alignment:
| Q |
1 |
tcttccactatctttttattataaataaactctctttgttcttccttatcactcaagctagcttcaaattgtaagaaatacaaaa-tcgtcaaaaatcat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |||||||||||| |
|
|
| T |
39824087 |
tcttccactatctttttattataaataaactctctttgttcttccttatcactcaagctagcttcatattgtaagcaatacaaaaatagtcaaaaatcat |
39824186 |
T |
|
| Q |
100 |
gggaaacaaagcgcatcttttgatcatgcttcttattctttgtcatggtgtctccatgacaattggaatgtgggaggcagaagatagagaaaacgaccct |
199 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||| |
|
|
| T |
39824187 |
gggaaacaaagcgcctcttttgatcatgcttcttattctttgtcatggtgtgtccatgacaatgggaatgtgggaggcagaagatagagaaaacaaacct |
39824286 |
T |
|
| Q |
200 |
tcaacgccagacaaaaaattgttcttgttgcaaaactccaagcgtgtggtgaagactgatgcaggagagatgagagtgttggagagtcatggtggtagaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39824287 |
tcaacgccagacaaaaaattgttcttgttgcaaaactccaagcgtgtggtgaagactgatgcaggagagatgagagtgttggagagtcatggtggtagaa |
39824386 |
T |
|
| Q |
300 |
tatttgaaagacacttgcacgttggttttattactatggaaccaagctcactttttgttcctcaatatcttgattccactctcatcatatttgtccttac |
399 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39824387 |
tatttgaaagacgcttgcacgttggttttattactatggaaccaagcccactttttgttcctcaatatcttgattccactctcatcatatttgtccttac |
39824486 |
T |
|
| Q |
400 |
aggtatcatatcatcgatccatataggttttccaatgtacgatctgcatgacaaaataacttacgagtaacatggctagatatttaaaattta |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39824487 |
aggtatcatatcatcgatccatataggttttccaatgtacgatctgcatgacaaaa----ttacgagtaacatggctagatatttaaaattta |
39824575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 6 - 492
Target Start/End: Original strand, 39812579 - 39813066
Alignment:
| Q |
6 |
cactatctttttattataaataaactctctttgttcttccttatcactcaagctagcttcaaattgtaagaaatacaaaa-tcgtcaaaaatcatgggaa |
104 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
39812579 |
cactatctttttattataaatagactctccttgttcttccttatcactcaagctagcttcaaattgtaagcaatacaaaaatagtcaaaaatcatgggaa |
39812678 |
T |
|
| Q |
105 |
acaaagcgcatcttttgatcatgcttcttattctttgtcatggtgtctccatgacaattggaatgtgggaggcagaagatagagaaaacgacccttcaac |
204 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
39812679 |
agaaagcgcctcttttgatcatgcttcttattctttgtcatggtgtgtccatgataatgggaatgtgggaggcagaagatagagaaaatggaccttcaac |
39812778 |
T |
|
| Q |
205 |
gccagacaaaaaattgttcttgttgcaaaactccaagcgtgtggtgaagactgatgcaggagagatgagagtgttggagagtcatggtggtagaatattt |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39812779 |
gccagacaacaaattgttcttgttgcaaaactcaaagcttgtggtgaagactgatgcaggagagatgagagtgttggagagtcatggtggtagaatatct |
39812878 |
T |
|
| Q |
305 |
gaaagacacttgcacgttggttttattactatggaaccaagctcactttttgttcctcaatatcttgattccactctcatcatatttgtccttacaggta |
404 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
39812879 |
gaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgtatttgtccatacaggta |
39812978 |
T |
|
| Q |
405 |
tcatatcatcgatccatataggttttccaatgtacgatctgcatgacaaaataacttacgagtaacatggctagatatttaaaattta |
492 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
39812979 |
tcatatcattaatccatttagattttccaatgtacgatttgcatgactaaataacttaggagtaacatgggtagatatttaaaattta |
39813066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 39881185 - 39881594
Alignment:
| Q |
5 |
ccactatcttttt-attataaataaactctctttgttcttccttatcactcaagctagcttcaaattgtaagaaatacaaaa-tcgtcaaaaatcatggg |
102 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
39881185 |
ccactatcttttttattacaaatagactctctttgttcttccttatgactcaagcaagcttcatattgtaagcaatacaaaaatagtcaaaaatcatggg |
39881284 |
T |
|
| Q |
103 |
aaacaaagcgcatcttttgatcatgcttcttattctttgtcatggtgtctccatgacaattggaatgtgggaggcagaagatagagaaaacgacccttca |
202 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
39881285 |
aaagaaagcgcctcttttgatcatgcttcttattctttgtcatggtgtgtccatgacaatggcaatgtgggaggcagaagatagagaaaatggaccttca |
39881384 |
T |
|
| Q |
203 |
acgccagacaaaaaattgttcttgttgcaaaactccaagcgtgtggtgaagactgatgcaggagagatgagagtgttggagagtcatggtggtagaatat |
302 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||| |
|
|
| T |
39881385 |
acgccagatagaaaattgttcttgttgcaaaactccaagcgtgtggtgaagactgatgcaggagagatgagaatgttagagagtcgtggtggaagaatat |
39881484 |
T |
|
| Q |
303 |
ttgaaagacacttgcacgttggttttattactatggaaccaagctcactttttgttcctcaatatcttgattccactctcatcatatttgtccttacagg |
402 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
39881485 |
tggaaagacgcttgcacgttggttttattactatggaaccaagctcactttttgttcctcaatatctggattccactctaatcatatttgtccttacagg |
39881584 |
T |
|
| Q |
403 |
tatcatatca |
412 |
Q |
| |
|
|||||||||| |
|
|
| T |
39881585 |
tatcatatca |
39881594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 413
Target Start/End: Original strand, 39908521 - 39908930
Alignment:
| Q |
5 |
ccactatctttttattataaataaactctctttgttcttccttatcactcaagctagcttcaaattgtaagaaatacaaaa-tcgtcaaaaatcatggga |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| | || ||||||||||||| |
|
|
| T |
39908521 |
ccactatctttttattataaatagactctctttgttcttccctatcactcaagcaagcttcaaattgtaagcaatacaaaaatagtaaaaaatcatggga |
39908620 |
T |
|
| Q |
104 |
aacaaagcgcatcttttgatcatgcttcttattctttgtcatggtgtctccatgacaattggaatgtgggaggcagaagatagagaaaacgacccttcaa |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| | | ||| | ||||||| |
|
|
| T |
39908621 |
aacaaagcgcctcttttgatcatgcttcttattctttgtcatggtgtgtccatgacaatggcaatgtgggaggcagaagacaaatcaaatggaccttcaa |
39908720 |
T |
|
| Q |
204 |
cgccagacaaaaaattgttcttgttgcaaaactccaagcgtgtggtgaagactgatgcaggagagatgagagtgttggagagtcatggtggtagaatatt |
303 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
39908721 |
cgaaagacaaaaaattgttcttgttgcaaaactcaaagcgtgtggtgaagactgatgcaggagagatgagagtgttagagagtcgtggtggtagaatatt |
39908820 |
T |
|
| Q |
304 |
tgaaagacacttgcacgttggttttattactatggaaccaagctcactttttgttcctcaatatcttgattccactctcatcatatttgtccttacaggt |
403 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39908821 |
ggaaagacgcttacacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcatatttgtccttacaggt |
39908920 |
T |
|
| Q |
404 |
atcatatcat |
413 |
Q |
| |
|
|||||||||| |
|
|
| T |
39908921 |
atcatatcat |
39908930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 413
Target Start/End: Original strand, 39803915 - 39804316
Alignment:
| Q |
13 |
tttttattataaataaactctctttgttcttccttatcactcaagctagcttcaaattgtaagaaatacaaaa-tcgtcaaaaatcatgggaaacaaagc |
111 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
39803915 |
ttttttttataaataaactctccttgttcttccttatcactcaagcaagcttcatattgtaagcaatacaaaaatagtcaaaaatcatgggaaacaaagc |
39804014 |
T |
|
| Q |
112 |
gcatcttttgatcatgcttcttattctttgtcatggtgtctccatgacaattggaatgtgggaggcagaagatagagaaaacgacccttcaacgccagac |
211 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | |||||||| ||| || |
|
|
| T |
39804015 |
gcctcttttgatcatgcttctgattctttgtcatggtgtgtccatgacaatgggaatgtgggaggtagaagatagagaaaatggaccttcaactccaaac |
39804114 |
T |
|
| Q |
212 |
aaaaaattgttcttgttgcaaaactccaagcgtgtggtgaagactgatgcaggagagatgagagtgttggagagtcatggtggtagaatatttgaaagac |
311 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
39804115 |
aaaaaattgttcttgttgcaaaactcaaagcttgtagtgaagactgatgcaggagagatgagagtgttaaagagtcatggtggtagaatatctgaaagac |
39804214 |
T |
|
| Q |
312 |
acttgcacgttggttttattactatggaaccaagctcactttttgttcctcaatatcttgattccactctcatcatatttgtccttacaggtatcatatc |
411 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39804215 |
gtttacacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcatatttgtccttacaggtatcatatc |
39804314 |
T |
|
| Q |
412 |
at |
413 |
Q |
| |
|
|| |
|
|
| T |
39804315 |
at |
39804316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 431
Target Start/End: Original strand, 39920022 - 39920450
Alignment:
| Q |
7 |
actatctttttattataaataaactctctttgttcttccttatcactcaagctagcttcaaattgtaagaaatacaaaa-tcgtcaaaaatcatgggaaa |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||| | || ||||||||||||||| |
|
|
| T |
39920022 |
actatctttttattataaatagactctctttattcttccttatgactcaagcaagcttcaaattgtaagcaatacaaaaatagtaaaaaatcatgggaaa |
39920121 |
T |
|
| Q |
106 |
caaagcgcatcttttgatcatgcttcttattctttgtcatggtgtctccatgacaattggaatgtgggaggcagaaga---tagagaaaacgacccttca |
202 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| || |||||| |||| ||| | |||||| |
|
|
| T |
39920122 |
gaaagcgcctcttttgatcatgcttcttattctttgtcatggtgtgtccatgacaatggcaatgtgggtggaagaagaagatagatcaaatggaccttca |
39920221 |
T |
|
| Q |
203 |
acgccagacaaaaaattgttcttgttgcaaaactccaagcgtgtggtgaagactgatgcaggagagatgagagtgttggagagtcatggtggtagaatat |
302 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
39920222 |
atgcaagacaaaaaattgttcttgttgcaaaactcaaagcgtgtggtgaagactgatgcaggagagatgagagtgttagagagtcgtggtggtagaatat |
39920321 |
T |
|
| Q |
303 |
ttgaaagacacttgcacgttggttttattactatggaaccaagctcactttttgttcctcaatatcttgattccactctcatcatatttgtccttacagg |
402 |
Q |
| |
|
| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39920322 |
tggaaagacgcttacacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcatatttgtccttacagg |
39920421 |
T |
|
| Q |
403 |
tatcatatcatcgatccatataggttttc |
431 |
Q |
| |
|
||||||||||| ||||||| ||| ||||| |
|
|
| T |
39920422 |
tatcatatcattgatccatttagattttc |
39920450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 490 - 621
Target Start/End: Original strand, 39824598 - 39824728
Alignment:
| Q |
490 |
ttaagatgacttgtgaaagatgtaattcccagatataaatgtattttgaaaatttatgagttaacttgaaaacggatttcaggagaagcaaaggtgggat |
589 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39824598 |
ttaagatcacttgtgaaagatg-aattcccagatataaatgtattttgaaaatttatgagttaacttgaaaacggatttcaggataagcaaaggtgggat |
39824696 |
T |
|
| Q |
590 |
tcatatataaggatgaattggcagagagggat |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39824697 |
tcatatataaggatgaattggcagagagggat |
39824728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 490 - 621
Target Start/End: Original strand, 39804560 - 39804691
Alignment:
| Q |
490 |
ttaagatgacttgtgaaagatgtaattcccagatataaatgtattttgaaaatttatgagttaacttgaaaacggatttcaggagaagcaaaggtgggat |
589 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
39804560 |
ttaagatcccttgtgaaagatgtaattcccagctataaatgtattttgaaaatttatgagttaacttgtaaatgaatttcaggagaagcaaaggtgggat |
39804659 |
T |
|
| Q |
590 |
tcatatataaggatgaattggcagagagggat |
621 |
Q |
| |
|
|| || || ||||||||||||||||||||||| |
|
|
| T |
39804660 |
tcgtaaatgaggatgaattggcagagagggat |
39804691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 490 - 621
Target Start/End: Original strand, 39813089 - 39813219
Alignment:
| Q |
490 |
ttaagatgacttgtgaaagatgtaattcccagatataaatgtattttgaaaatttatgagttaacttgaaaacggatttcaggagaagcaaaggtgggat |
589 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||| |||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39813089 |
ttaagatcgcttgtgaaagatgta-ttctcagctataaatgtaatttgaaaatttatgagtgaacttgaaaatggatttcaggagaagcaaaggtgggat |
39813187 |
T |
|
| Q |
590 |
tcatatataaggatgaattggcagagagggat |
621 |
Q |
| |
|
| || || ||||||||||||||||||||||| |
|
|
| T |
39813188 |
ttgtaaatgaggatgaattggcagagagggat |
39813219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 39804480 - 39804543
Alignment:
| Q |
433 |
aatgtacgatctgcatgacaaaataacttacgagtaacatggctagatatttaaaatttaagat |
496 |
Q |
| |
|
||||||| || |||||||| ||| |||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
39804480 |
aatgtacaatttgcatgactaaaaaacttaggagtaacatggctagatacttaaaatttaagat |
39804543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 540 - 610
Target Start/End: Original strand, 39882226 - 39882296
Alignment:
| Q |
540 |
aatttatgagttaacttgaaaacggatttcaggagaagcaaaggtgggattcatatataaggatgaattgg |
610 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||| ||||||||||| ||| |||| ||| |||||||||||| |
|
|
| T |
39882226 |
aatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggaatcatgtatgaggatgaattgg |
39882296 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 540 - 610
Target Start/End: Original strand, 39909595 - 39909665
Alignment:
| Q |
540 |
aatttatgagttaacttgaaaacggatttcaggagaagcaaaggtgggattcatatataaggatgaattgg |
610 |
Q |
| |
|
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|
|
| T |
39909595 |
aatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggattcatgtatgagaatgaattgg |
39909665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 540 - 610
Target Start/End: Original strand, 39920914 - 39920984
Alignment:
| Q |
540 |
aatttatgagttaacttgaaaacggatttcaggagaagcaaaggtgggattcatatataaggatgaattgg |
610 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||| ||||||||||| |||||||| ||| || ||||||||| |
|
|
| T |
39920914 |
aatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggattcatgtatgagaatgaattgg |
39920984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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