View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_81 (Length: 239)
Name: NF20539_low_81
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 18538862 - 18538644
Alignment:
| Q |
4 |
acacatgcatacatctggttttcattatggttcctcattccctccattttcgctacctcctttttgttcacccccaccttgtgaactttctccaccatga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
18538862 |
acacatgcatacatctggttttcattatggttcctcattccctccattttcgctacctcctttttgttcacccccaccttgtgaactttttccaccacga |
18538763 |
T |
|
| Q |
104 |
tttcctcctgaaccttgttcaccattttttcttcctgcaccacctttttctccatagtttatccatcctnnnnnnnatggtttccatagaactgtctcaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
18538762 |
tttcctcctgaaccttgttcaccattttttcttcctgcaccacctttttctccatagtttatccatcctcccccccatggtttccatggaactgtctcaa |
18538663 |
T |
|
| Q |
204 |
cttttgatatgacgtcttt |
222 |
Q |
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||||||||||||||||||| |
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| T |
18538662 |
cttttgatatgacgtcttt |
18538644 |
T |
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