View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_82 (Length: 239)
Name: NF20539_low_82
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_82 |
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| [»] scaffold0156 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 40670772 - 40670993
Alignment:
| Q |
17 |
agttcaaaggtagctagagaatcaaatcttgtaggttaaggtgctttcatatttgtttttgcttgcaaaatacacaagagaattcaatgacaatgcctag |
116 |
Q |
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| T |
40670772 |
agttcaaaggtagctagagaatcaaatcttgtaggttaaggtgctttcatatttgtttttgcttgcaaaatacacaagagaattcaatgataatgcctag |
40670871 |
T |
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| Q |
117 |
gttttcttatcatatttactttggttgtagcatacatccggatataactacacatgttggtttctagacatttgggcattcactttgtgcatgttaggaa |
216 |
Q |
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| T |
40670872 |
gttttcttatcatatttactttggttgtagcatacatctggatataactacacatgttggtttctagacatttgggcattcactttgtgcatgttaggaa |
40670971 |
T |
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| Q |
217 |
tgacattgtaaaggtttcattg |
238 |
Q |
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| T |
40670972 |
tgacattgtaaaggtttcattg |
40670993 |
T |
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Target: scaffold0156 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 21612 - 21557
Alignment:
| Q |
183 |
gacatttgggcattcactttgtgcatgttaggaatgacattgtaaaggtttcattg |
238 |
Q |
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| T |
21612 |
gacatttgggcattaacattgtggatgttaggaatgacagtgtaaaggtttcattg |
21557 |
T |
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