View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_83 (Length: 238)
Name: NF20539_low_83
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_83 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0164 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 43557669 - 43557888
Alignment:
| Q |
18 |
ggtaaaatagtcactaagtctattccattctctttgcaataatcccaagctgctttttctgccaatgtctttgacattgggtaccatgccttaattcaat |
117 |
Q |
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| T |
43557669 |
ggtaaaatagtcactaagtctattccattctctttgcaataatcccaagctgctttttctgccaatgtctttgacattgggtaccatgccttaattcaat |
43557768 |
T |
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| Q |
118 |
acaagtttgtcacatttgagtacatgttaatcaaaatcttataaatatatgattacttaaggaaatgtgtacctggagtttctcacacaattccaatgag |
217 |
Q |
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| T |
43557769 |
acaagtttgtcaca-ttgagtacatgttaatcaaaatcttataaatatattattacttaaggaaatgtgtacctggagtttctcacacaattccaatgag |
43557867 |
T |
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| Q |
218 |
ctccaagatgactcgtctatt |
238 |
Q |
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| T |
43557868 |
ctccaagatgactcgtctatt |
43557888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 36517254 - 36517149
Alignment:
| Q |
133 |
ttgagtacatgttaatcaaaatcttataaatatatgattacttaaggaaatgtgtacctggagtttctcacacaattccaatgagctccaagatgactcg |
232 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36517254 |
ttgagtacatgctaatcaaaatcttataaatatatgattacttaaggaaatgtgtacctggagtttctcacacaattccaatgtgctccaagatgactcg |
36517155 |
T |
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| Q |
233 |
tctatt |
238 |
Q |
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|||||| |
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| T |
36517154 |
tctatt |
36517149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 30924818 - 30924757
Alignment:
| Q |
42 |
ccattctctttgcaataatcccaagctgctttttctgccaatgtctttgacattgggtacca |
103 |
Q |
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| T |
30924818 |
ccattttctttggaaaaatcccaagcagctttctcagccaatgtcttggacattggatacca |
30924757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 22888 - 22994
Alignment:
| Q |
27 |
gtcactaagtctattccattctctttgcaataatcccaagctgctttttctgccaatgtctttgacattgggtaccatgccttaattcaat-acaagttt |
125 |
Q |
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||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| | | |||||||||| |||||||| ||| |||| |
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| T |
22888 |
gtcaccaagtctattcctttctctttgcaatattcccaagctgctttttctgccagtgtctttgagaccgtgtaccatgcccaaattcaataacatgttt |
22987 |
T |
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| Q |
126 |
gtcacat |
132 |
Q |
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| T |
22988 |
gtcacat |
22994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 23164 - 23263
Alignment:
| Q |
133 |
ttgagtacatgttaatcaaaatcttataaatatatgattacttaaggaaatgtgtacctggagtttctcacacaattccaatgagctccaagatgactcg |
232 |
Q |
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|||||| |||| |||| ||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
23164 |
ttgagtgcatgctaattaaaatcttacaaatatataattacttgaggaaatgtgtacctgg------tcacacaattcctatgagctccaagatgactcg |
23257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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