View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_85 (Length: 238)
Name: NF20539_low_85
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14999118 - 14998898
Alignment:
| Q |
1 |
ctttagttccttcctctttcaaagtgtttgaaagcttaatactaatcatgaaatagtttggaagtaagaactaaattccagacaacatcattattgaacc |
100 |
Q |
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| T |
14999118 |
ctttagttccattctctttcaaattgtttgaaagcttaatgctaatcatgaaatagtttggaagtaagaactaaattccagacaacagccttattgaacc |
14999019 |
T |
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| Q |
101 |
atattttctgaatcaaactcaatttattgcaccc------tatgggctatggctccatacgaaagcattgaatcaatttgatcacaactttgaatatgga |
194 |
Q |
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| T |
14999018 |
atgttttctgaatcaaactcaacttattgtaccctatgagtatgggctattgctacatacgaaagcattaaatcaatatgat------tttgaatatgga |
14998925 |
T |
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| Q |
195 |
atttagaggcatcaaataggaagtgat |
221 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
14998924 |
attcagaggcatcaaataggaagtgat |
14998898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 43013346 - 43013306
Alignment:
| Q |
14 |
ctctttcaaagtgtttgaaagcttaatactaatcatgaaat |
54 |
Q |
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| T |
43013346 |
ctctttcaaagtgtttcaatgcttaatactaatcatcaaat |
43013306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 32611608 - 32611743
Alignment:
| Q |
85 |
acatcattattgaaccatattttctgaatcaaactcaatttattgcaccctatgggctatggctccatacgaaagcattgaatcaatttgatcacaactt |
184 |
Q |
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| T |
32611608 |
acatccttattgaaccatattttctgaatcaaactcaatttattgcaccctatgggatatggctatatacgaaagcattgaatcaatttgatca-aactt |
32611706 |
T |
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| Q |
185 |
tgaatatggaatttagaggcatcaaataggaagtgat |
221 |
Q |
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| T |
32611707 |
tcaatatggaattcagaggcatcaaataggaagtgat |
32611743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 11762712 - 11762673
Alignment:
| Q |
5 |
agttccttcctctttcaaagtgtttgaaagcttaatacta |
44 |
Q |
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| T |
11762712 |
agttcatttctctttcaaagtgtttgaaagcttaatacta |
11762673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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